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Fractals from genomes [Review]

机译:基因组的分形[综述]

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摘要

A visualization scheme of avoided and under-represented strings in complete genomes reveals some nice patterns which become precise fractals in the non-biological limit of infinitely long strings. There arises the problem of calculating the dimensions of these fractals with self-similar and self-overlapping structures. Direct counting of avoided strings in a complete genome raises the problem of distinguishing true and redundant avoided strings of a given length knowing the number of shorter ones. The two problems turn out to be one and are solved exactly by using two different methods: combinatorics and language theory. [References: 10]
机译:完整基因组中避免和代表性不足的弦的可视化方案揭示了一些不错的模式,这些模式在无限长的弦的非生物极限内变成了精确的分形。出现了用自相似和自重叠结构计算这些分形的维数的问题。在完整的基因组中直接对避免的字符串进行计数会产生一个问题,即在知道较短的数目的情况下,区分给定长度的真实和多余的避免的字符串。这两个问题合而为一,并通过使用两种不同的方法来精确解决:组合语言学和语言理论。 [参考:10]

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