RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

Lazzarato F; Franceschinis G; Botta M; Cordero F; Calogero RA

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RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

机译：RRE：一种从基因组数据集中提取注释基因周围非编码区的工具

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摘要

RRE allows the extraction of non-coding regions surrounding a coding sequence [i.e. gene upstream region, 5'-untranslated region (5'-UTR), introns, 3'-UTR, downstream region] from annotated genomic datasets available at NCBI.

机译：RRE允许提取编码序列周围的非编码区域[即基因上游区域，5'非翻译区域（5'-UTR），内含子，3'-UTR，下游区域]来自可从NCBI获得的注释基因组数据集。

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《Bioinformatics》 |2004年第16期|共3页
作者
Lazzarato F; Franceschinis G; Botta M; Cordero F; Calogero RA;
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正文语种 eng
中图分类生物科学;
关键词
BREAST-CANCER CELLS; PROMOTER; EXPRESSION; SEQUENCES; PATTERNS; ELEMENTS; MOTIFS; MOUSE;

机译：乳腺癌细胞;启动子;表达;序列;模式;元素;运动;小鼠;

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专利

1. RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets [J] . Lazzarato F, Franceschinis G, Botta M, Bioinformatics . 2004,第16期

机译：RRE：一种从基因组数据集中提取注释基因周围非编码区的工具
2. Annotating pathogenic non-coding variants in genic regions [J] . Sahar Gelfman, Quanli Wang, K. Melodi McSweeney, Nature Communications . 2017,第1期

机译：注释基因区域中的致病性非编码变异
3. A TOOL FOR IDENTIFYING PUTATIVE SNPs IN NON-CODING GENOMIC REGIONS, APPLIED TO HISTAMINE RECEPTORS [J] . Rojano E., Cornejo-Garcia J. A., Blanca M., Inflammation research: Official journal of the European Histamine Research Society . 2015,第Suppla1期

机译：用于识别非编码基因组区域中惯性单核苷酸多态性的工具，适用于组胺受体
4. MyFixit: An Annotated Dataset, Annotation Tool, and Baseline Methods for Information Extraction from Repair Manuals [C] . Nima Nabizadeh, Dorothea Kolossa, Martin Heckmann International Conference on Language Resources and Evaluation . 2020

机译：MyFixit：从维修手册中提取信息提取的注释数据集，注释工具和基线方法
5. Using human genetic variation to predict functional elements in non-coding genomic regions. [D] . Lomelin, David. 2010

机译：使用人类遗传变异预测非编码基因组区域中的功能元件。
6. Annotating pathogenic non-coding variants in genic regions [O] . Sahar Gelfman, Quanli Wang, K. Melodi McSweeney, -1

机译：注释基因区域中的致病性非编码变异
7. peakPantheR, an R package for large-scale targeted extraction and integration of annotated metabolic features in LC–MS profiling datasets [O] . Arnaud M Wolfer, Gonçalo D S Correia, Caroline J Sands, 2021

机译：PeakPanther，用于大规模目标提取的R包，LC-MS分析数据集中的大型目标提取和集成的注释代谢特征
8. Genetic and Molecular Characterization of Genomic Regions Surrounding Specific Loci of the Mouse [R] . Russell, L. B. , Rinchik, E. M. 1987

机译：小鼠特定基因周围基因组区域的遗传和分子特征

RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

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