GeneHuggers: database mining and application connectivity tools for subsequence analyses of the human genome.

Iacovoni JS

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GeneHuggers: database mining and application connectivity tools for subsequence analyses of the human genome.

机译：GeneHuggers：用于人类基因组子序列分析的数据库挖掘和应用程序连接工具。

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SUMMARY: GeneHuggers is a collection of program modules that enables precise selection of subsequence regions from records of the RefSeq human genome database. Subsequence regions can be selected based on diverse criteria, including feature addresses, annotations from LocusLink and UniGene, and results obtained from analyses with homologous subsequence detection programs. GeneHuggers provides functionality to the UNIX operating system that allows customized bioinformatics program development. AVAILABILITY: GeneHuggers source code is available under the GNU general public license and can be downloaded from ftp://ftp.scripps.edu/pub/genehuggers/gh.tar.gz

机译：简介：GeneHuggers是程序模块的集合，可以从RefSeq人类基因组数据库的记录中精确选择子序列区域。可以根据各种标准选择子序列区域，包括特征地址，来自LocusLink和UniGene的注释以及通过同源子序列检测程序进行分析获得的结果。 GeneHuggers为UNIX操作系统提供功能，该功能允许定制的生物信息学程序开发。可用性：GeneHuggers源代码在GNU通用公共许可证下提供，可以从ftp://ftp.scripps.edu/pub/genehuggers/gh.tar.gz下载

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《Bioinformatics》 |2003年第17期|共3页
作者
Iacovoni JS;
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正文语种 eng
中图分类医学与其他学科的关系;
关键词
Human; Databases; Mining; Genome; genome database; 数据库; 采矿; 基因组;

机译：Human;Databases;Mining;Genome;genome database;数据库;采矿;基因组;

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1. GeneHuggers: database mining and application connectivity tools for subsequence analyses of the human genome. [J] . Iacovoni JS Bioinformatics . 2003,第17期

机译：GeneHuggers：用于人类基因组子序列分析的数据库挖掘和应用程序连接工具。
2. Analysing factors related to slipping, stumbling, and falling accidents at work: Application of data mining methods to Finnish occupational accidents and diseases statistics database [J] . Noora Nenonen Applied Ergonomics . 2013,第2期

机译：分析与工作中的滑倒，绊倒和摔倒事故有关的因素：数据挖掘方法在芬兰职业事故和疾病统计数据库中的应用
3. Efficient Mining of Gap-Constrained Subsequences and Its Various Applications [J] . CHUN LI, QINGYAN YANG, JIANYONG WANG, ACM transactions on knowledge discovery from data . 2012,第1期

机译：间隙约束子序列的有效挖掘及其各种应用
4. Upstream Sequence Finder-Tool to Find Out Upstream Element in Various Database or Genome. [C] . Jha Vineet, Mazumder Mohit, Roy Susanta IEEE International Advance Computing Conference . 2009

机译：上游序列查找器 - 在各种数据库或基因组中找出上游元素。
5. Development and application of genomics tools for analysis of grass genome. [D] . Yu, Yeisoo. 2000

机译：用于草基因组分析的基因组学工具的开发和应用。
6. Cell-culture Database: Literature-based reference tool for human and mammalian experimentallybased cell culture applications [O] . Vafa Amirkia, Pan Qiubao 2012

机译：细胞培养数据库：用于人类和哺乳动物基于实验的细胞培养应用的基于文献的参考工具
7. : "This paper deals with the functionality of the flaked stone assemblages from several Neolithic sites of the NE of the Iberian Peninsula. The chronological framework ranges from the mid-6th to the mid-4th millennium cal. BCE, which corresponds to the Early and Middle Neolithic. This long period ranges from the arrival of the first farming communities in the Iberian Peninsula, around 5600-5500 cal. BCE, to 3600-3500 cal. BCE, two millennia later, when Neolithic communities had stably occupied most of the available territory, from the mountainous areas of the Pyrenees to the coastal areas of the Mediterranean.In this context, the NE of the Iberian Peninsula is one of the areas where a major number of use-wear analyses have been carried out, especially for what concerns the Neolithic period. This is mainly due to the interest shown by the directors of the excavations and by the Spanish use-wear specialists as well; both participated and cooperated in order to enlarge the number of contexts studied, making the NE of the Iberian Peninsula one of the areas of Europe with the largest number of ‘functional studies’. As a result, today we have a reliable picture of the type of lithic tools used by the first farming groups, how they were used, and which needs they were satisfying.The methodology employed for this type of analysis is today broadly shared by most use-wear specialists. A stereoscopic microscope is used together with a reflected-light microscope for the analysis of the archaeological specimens. Afterwards, the observed use-wear traces are compared with the traces from experimental tools. This study primarily made use of the tools preserved at the ‘Traceoteque’ of the Institución Milà y Fontanals of the CSIC of Barcelona.This paper presents the results obtained for the different types of analysed sites and the relative lithic assemblages. In this way, tools from different contexts are compared: open-air sites, caves and rock-shelters, pit-sites, burials, and mining sites. Such a diversity of contexts allowed for the exploration of the existence of recurrences and differences in the functionality of the lithic tools from one site to another. The results obtained have also provided information on some aspects related to the economic processes carried out at the different sites, caves, rock-shelters and open-air contexts. It has been possible to gain fresh data on the types of tasks carried out and their relative importance for each site, their relation with the geographical and environmental context and the natural resources available there. In addition, analysing tools recovered from burials – mainly individual inhumations – provided information on the relationships between the buried individuals and the working tools, in particular exploring the relationships between sex and age patterns and the types of tools deposited as goods.In conclusion, use-wear analysis allowed for the exploration of a variety of issues; from technical aspects related to the production and management of the lithic resources to social aspects related to the subsistence activities and the individuals that carried them out." [O] . Gibaja Bao, Juan Francisco, Mazzucco, Niccolo 2015

机译：：“本文研究了伊比利亚半岛东北部几个新石器时代遗址的片状石材组合的功能。时间框架从公元前6世纪中叶到4世纪中叶，分别对应于早期和早期。新石器时代中期，这段时间的长短是从伊比利亚半岛的第一个农业社区到来，大约在公元前5600-5500 cal，到了两千年后的3600-3500 BCE，当时新石器时代的社区稳定地占据了大部分可用土地。从比利牛斯山脉山区到地中海沿岸地区。在这种情况下，伊比利亚半岛东北部是进行过大量使用磨损分析的地区之一，尤其是在关注方面新石器时代，这主要是由于发掘负责人和西班牙使用服装专家表现出的浓厚兴趣；他们参与和合作以扩大孔蒂的数量xts进行了研究，使伊比利亚半岛的NE成为“功能研究”数量最多的欧洲地区之一。结果，今天我们可以可靠地了解第一批耕作小组使用的石器工具的类型，使用方法以及它们满足的需求。今天，大多数使用方法广泛共享用于这种类型的分析的方法穿专家。立体显微镜与反射光显微镜一起用于分析考古样本。然后，将观察到的使用磨损痕迹与实验工具的痕迹进行比较。这项研究主要利用了巴塞罗那CSIC的米拉·丰塔纳尔研究所的“ Traceoteque”中保存的工具。本文介绍了针对不同类型的分析地点和相对石器组合所获得的结果。通过这种方式，可以比较来自不同环境的工具：露天场所，洞穴和岩石避难所，露天场所，埋葬场所和采矿场所。如此多样的上下文允许探索重复性的存在以及从一个站点到另一个站点的石器工具的功能差异。所获得的结果还提供了与在不同地点，洞穴，避难所和露天环境中进行的经济过程有关的某些方面的信息。可以获得有关所执行任务的类型及其对每个站点的相对重要性，它们与地理和环境环境以及那里可用自然资源的关系的新数据。此外，对从墓葬中回收的工具（主要是个人遗体）进行分析，可提供有关被掩埋的个体与工作工具之间关系的信息，尤其是探索性别与年龄模式之间的关系以及作为商品存放的工具的类型。磨损分析允许探索各种问题；从与石器资源的生产和管理有关的技术方面到与自给活动及其实施者有关的社会方面。”

GeneHuggers: database mining and application connectivity tools for subsequence analyses of the human genome.

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