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BioJava: an open-source framework for bioinformatics in 2012

机译:BioJava:2012年用于生物信息学的开源框架

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Motivation: BioJava is an open-source project for processing of biological data in the Java programming language. We have recently released a new version (3.0.5), which is a major update to the code base that greatly extends its functionality. Results: BioJava now consists of several independent modules that provide state-of-the-art tools for protein structure comparison, pairwise and multiple sequence alignments, working with DNA and protein sequences, analysis of amino acid properties, detection of protein modifications and prediction of disordered regions in proteins as well as parsers for common file formats using a biologically meaningful data model.
机译:动机:BioJava是一个开放源代码项目,用于以Java编程语言处理生物数据。我们最近发布了一个新版本(3.0.5),它是对代码库的重大更新,极大地扩展了其功能。结果:BioJava现在由几个独立的模块组成,这些模块提供用于蛋白质结构比较,成对和多序列比对,处理DNA和蛋白质序列,氨基酸特性分析,蛋白质修饰检测和预测的最新工具使用生物学上有意义的数据模型,分析蛋白质中的无序区域以及常见文件格式的解析器。

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