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Think pink: Photosynthesis, plasmids and the Roseobacter clade

机译:认为是粉红色:光合作用,质粒和玫瑰杆菌属

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Aerobic anoxygenic photosynthesis providing additional ATP for a photoheterotrophic lifestyle is characteristic for several representatives of the marine Roseobacter clade. The patchy distribution of photosynthesis gene clusters (PGCs) within this lineage probably results from horizontal transfers and this explanation is supported by two cases of plasmid-located PGCs. In this study sequencing of the three Sulfitobacter guttiformis plasmids (pSG4, pSG53, pSG118) was initiated with the objective to analyse the 118kb-sized photosynthetic replicon, but our annotation revealed several additional important traits including key genes of the primary metabolism. The comparison of the two photosynthesis plasmids from S. guttiformis and Roseobacter litoralis showed that their replication modules are located at precisely the same position within the 45kb-sized PGC. However, comprehensive phylogenetic analyses of the non-homologous replicases (RepB-III, DnaA-like I) and the two ParAB partitioning proteins unequivocally document an independent origin of their extrachromosomal replicons. The analogous positioning within the two photosynthesis super-operons can be explained by a two-step recombination scenario and seems to be the ultimate result of stabilizing selection. Our exemplary analyses of 'pink' plasmids document that chromosomal outsourcing is a common phenomenon in the Roseobacter clade and subsequent horizontal exchanges offer rapid access to the marine pan-genome.
机译:有氧产氧光合作用为光异养生活方式提供了额外的ATP,这是海洋Roseobacter进化枝的几个代表的特征。该谱系内光合作用基因簇(PGC)的斑片分布可能是由于水平转移引起的,并且这种解释得到了两个质粒定位的PGC的支持。在这项研究中,启动了三个古氏无硫杆菌质粒(pSG4,pSG53,pSG118)的测序,目的是分析118kb大小的光合复制子,但我们的注释揭示了一些其他重要特征,包括初级代谢的关键基因。来自古氏链霉菌和斜纹玫瑰菌的两种光合作用质粒的比较表明,它们的复制模块位于45kb大小的PGC内的精确相同位置。但是,对非同源复制子(RepB-III,DnaA-like I)和两个ParAB分隔蛋白的全面系统发育分析明确地证明了它们染色体外复制子的独立起源。在两个光合作用超级操纵子中的类似定位可以通过两步重组方案来解释,并且似乎是稳定选择的最终结果。我们对“粉红色”质粒的示例分析表明,染色体外包是玫瑰杆菌属中的常见现象,随后的水平交换提供了快速进入海洋全基因组的途径。

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