In silico analysis of motifs in promoters of differentially expressed genes in rice (Oryza sativa L.) under anoxia.

Shankaracharya; Vidyarthi A; Pandey DM

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In silico analysis of motifs in promoters of differentially expressed genes in rice (Oryza sativa L.) under anoxia.

机译：在缺氧条件下水稻（Oryza sativa L.）差异表达基因启动子中的基序进行计算机分析。

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The aim of this study was to characterise the molecular mechanisms of transcriptional regulation of Differentially Expressed Genes (DEGs) in rice coleoptiles under anoxia by identifying motifs that are common in the promoter region of co-regulated genes. Un-changed DEGs (<2 fold and >-2), up-regulated DEGs (>or=2 fold) and down-regulated DEGs (

机译：这项研究的目的是鉴定缺氧条件下水稻胚芽鞘中差异表达基因（DEGs）转录调控的分子机制，方法是鉴定共同调控基因启动子区域中常见的基序。未更改的DEG（<2倍和> -2倍），上调的DEG（>或= 2倍）和下调的DEG（<或= -2倍）被分为三个不同的数据集。从真核启动子数据库中提取了它们的基因启动子。通过计算机方法检测到统计学上显着的共有启动子基序。在UR-DEG和DR-DEG之间检测到启动子基序，共有启动子基序及其序列的数量发生了显着变化，这可能与它们的相关表达有关。

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《International journal of bioinformatics research and applications》 |2009年第5期|共23页
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Shankaracharya; Vidyarthi A; Pandey DM;
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中图分类生物科学;
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1. In silico analysis of motifs in promoters of differentially expressed genes in rice (Oryza sativa L.) under anoxia. [J] . Shankaracharya, Vidyarthi A, Pandey DM International journal of bioinformatics research and applications . 2009,第5期

机译：在缺氧条件下水稻（Oryza sativa L.）差异表达基因启动子中的基序进行计算机分析。
2. In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control [J] . Lindlof A, Brautigam M, Chawade A, Bioinformatics . 2009,第11期

机译：在计算机分析水稻（Oryza sativa L.）和拟南芥中冷诱导基因的启动子区域时，揭示了组合控制的重要性
3. In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control [J] . Angelica Lindlöf1* Marcus Bräutigam2 Aakash Chawade3 Olof Olsson3 and Björn Olsson1 Bioinformatics . 2009,第11期

机译：在计算机分析水稻（Oryza sativa L.）和拟南芥中冷诱导基因的启动子区域时，揭示了组合控制的重要性
4. Gene ontology analysis of the differentially expressed genes in Oryza sativa implanted by the low-energy nitrogen ion [C] . Ya Huiyuan, Liang Gaofeng, Chen Qiufang, 2011 International Conference on Remote Sensing, Environment and Transportation Engineering . 2011

机译：低能氮离子注入水稻中差异表达基因的基因本体分析
5. Structure, expression and promoter activity of ubiquitin genes from rice (Oryza sativa L.). [D] . Wang, Jianlin. 2000

机译：水稻（Oryza sativa L.）泛素基因的结构，表达和启动子活性。
6. Identification of GCC-box and TCC-box motifs in the promoters of differentially expressed genes in rice (Oryza sativa L.): Experimental and computational approaches [O] . Gopal Kumar Prajapati, Bharati Pandey, Awdhesh Kumar Mishra, 2012

机译：鉴定水稻差异表达基因启动子中GCC-box和TCC-box基序的实验和计算方法
7. In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control [O] . Lindlöf, Angelica, Bräutigam, Marcus, Chawade, Aakash, 2009

机译：在计算机分析水稻（Oryza sativa L.）和拟南芥中冷诱导基因的启动子区域时，揭示了组合控制的重要性

In silico analysis of motifs in promoters of differentially expressed genes in rice (Oryza sativa L.) under anoxia.

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