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Moving horizon estimation of Amnioserosa cell dynamics during Drosophila dorsal closure

机译:果蝇背侧闭合期间羊膜腔细胞动力学的移动视界估计

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摘要

Dorsal closure is a morphogenetic process similar to wound healing, whereby a gap in the epithelium is closed through the coordination of the elongation of epidermal cells and contraction of Amnioserosa cells (AS). Throughout the early stages of this process, the AS cells exhibit fluctuations of their apical area which provides an ideal system to understand contractile epithelia, both in terms of the cellular mecha-nisms and how tissue behavior emerges from the activity of individual cells. In this work, we present a vertex-based model to explore the dynamics of Amnioserosa cells and provide insights into the regulation of dorsal closure. Towards this end, moving horizon estimation is used to predict the mechanics of AS cell oscillations and contractions modeled as a quasi-linear parameter-varying system with bounded unknown parameters. We perform estimation through the minimization of the least-squares moving horizon cost with respect to both state variables and unknown parameters simultaneously. For simulation purposes, data from the work published in 13 are used to evaluate the performance of moving-horizon estimation as compared to the extended Kalman filter. The comparative analysis reveals that the moving-horizon ap-proach performs better than those provided by the Kalman filtering and with an increased robustness to measurement and process noises. COPY; 2023 European Control Association. Published by Elsevier Ltd. All rights reserved.
机译:背闭合是一种类似于伤口愈合的形态发生过程,通过表皮细胞的伸长和羊膜腔细胞 (AS) 的收缩的协调来闭合上皮中的间隙。在这个过程的早期阶段,AS细胞表现出其顶端面积的波动,这为理解收缩性上皮提供了一个理想的系统,无论是在细胞机制方面,还是在组织行为如何从单个细胞的活动中出现。在这项工作中,我们提出了一个基于顶点的模型来探索羊膜腔细胞的动力学,并为背闭合的调节提供见解。为此,移动地平线估计用于预测AS单元振荡和收缩的机制,该机制被建模为具有有限未知参数的准线性参数变化系统。我们通过同时对状态变量和未知参数的最小二乘移动地平线成本进行最小化进行估计。出于仿真目的,使用发表在[13]中的工作数据来评估与扩展卡尔曼滤波相比,移动地平线估计的性能。对比分析表明,移动视界ap-proach的性能优于卡尔曼滤波,并且对测量和过程噪声具有更高的鲁棒性。& 复制;2023 年欧洲控制协会。由以下开发商制作:Elsevier Ltd.保留所有权利。

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