A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles

Louyakis Artemis S.; Gourlé Hadrien; Casaburi Giorgio; Bonjawo Rachelle M. E.; Duscher Alexandrea A.; Foster Jamie S.

摘要

Summary >Microbialites are one of the oldest known ecosystems on Earth and the coordinated metabolisms and activities of these mineral‐depositing communities have had a profound impact on the habitability of the planet. Despite efforts to understand the diversity and metabolic potential of these systems, there has not been a systematic molecular analysis of the transcriptional changes that occur within a living microbialite over time. In this study, we generated metatranscriptomic libraries from actively growing thrombolites, a type of microbialite, throughout diel and seasonal cycles and observed dynamic shifts in the population and metabolic transcriptional activity. The most transcribed genes in all seasons were associated with photosynthesis, but only transcripts associated with photosystem II exhibited diel cycling. Photosystem I transcripts were constitutively expressed at all time points including midnight and sunrise. Transcripts associated with nitrogen fixation, methanogenesis and dissimilatory sulfate reduction exhibited diel cycling, and variability between seasons. Networking analysis of the metatranscriptomes showed correlated expression patterns helping to elucidate how metabolic interactions are coordinated within the thrombolite community. These findings have identified distinctive temporal patterns within the thrombolites and will serve an important foundation to understand the mechanisms by which these communities form and respond to changes in their environment. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span>None </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" >著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology》</a> <b style="margin: 0 2px;">|</b><span>2018年第2期</span><b style="margin: 0 2px;">|</b><span>共20页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Louyakis Artemis S.&option=202" target="_blank" rel="nofollow">Louyakis Artemis S.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Gourlé Hadrien&option=202" target="_blank" rel="nofollow">Gourlé Hadrien;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Casaburi Giorgio&option=202" target="_blank" rel="nofollow">Casaburi Giorgio;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Bonjawo Rachelle M. E.&option=202" target="_blank" rel="nofollow">Bonjawo Rachelle M. E.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Duscher Alexandrea A.&option=202" target="_blank" rel="nofollow">Duscher Alexandrea A.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Foster Jamie S.&option=202" target="_blank" rel="nofollow">Foster Jamie S.;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li > <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span><a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/academic-journal-cn_chinese-journal-oceanic-limnology-english-edition_thesis/0201252503190.html">Comparative transcriptomics reveals genes involved in metabolic and immune pathways in the digestive gland of scallop Chlamys farreri following cadmium exposure</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=ZHANG Hui&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">ZHANG Hui,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=ZHAI Yuxiu&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">ZHAI Yuxiu,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=YAO Lin&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">YAO Lin,</a> <a href="/journal-foreign-4835/" target="_blank" rel="nofollow" class="tuijian_authcolor">中国海洋湖沼学报（英文版） .</a> <span>2017</span><span>,第003期</span> </span> </div> </li> <li> <div> <b>2. </b><a class="enjiyixqcontent" href="/academic-journal-cn_current-zoology_thesis/0201288758674.html">Long-term overlap of social and genetic structure in free-ranging house mice reveals dynamic seasonal and group size effects</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Julian C. 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