Metagenomic insights into zooplankton‐associated bacterial communities

De Corte Daniele; Srivastava Abhishek; Koski Marja; Garcia Juan Antonio L.; Takaki Yoshihiro; Yokokawa Taichi; Nunoura Takuro; Elisabeth Nathalie H.; Sintes Eva; Herndl Gerhard J.

摘要

Summary >Zooplankton and microbes play a key role in the ocean's biological cycles by releasing and consuming copious amounts of particulate and dissolved organic matter. Additionally, zooplankton provide a complex microhabitat rich in organic and inorganic nutrients in which bacteria thrive. In this study, we assessed the phylogenetic composition and metabolic potential of microbial communities associated with crustacean zooplankton species collected in the North Atlantic. Using Illumina sequencing of the 16S rRNA gene, we found significant differences between the microbial communities associated with zooplankton and those inhabiting the surrounding seawater. Metagenomic analysis of the zooplankton‐associated microbial community revealed a highly specialized bacterial community able to exploit zooplankton as microhabitat and thus, mediating biogeochemical processes generally underrepresented in the open ocean. The zooplankton‐associated bacterial community is able to colonize the zooplankton's internal and external surfaces using a large set of adhesion mechanisms and to metabolize complex organic compounds released or exuded by the zooplankton such as chitin, taurine and other complex molecules. Moreover, the high number of genes involved in iron and phosphorus metabolisms in the zooplankton‐associated microbiome suggests that this zooplankton‐associated bacterial community mediates specific biogeochemical processes (through the proliferation of specific taxa) that are generally underrepresented in the ambient waters. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span>None </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" > 著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology 》</a> <b style="margin: 0 2px;">|</b><span>2018年第2期</span><b style="margin: 0 2px;">|</b> <span>共14页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=De Corte Daniele&option=202" target="_blank" rel="nofollow">De Corte Daniele;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Srivastava Abhishek&option=202" target="_blank" rel="nofollow">Srivastava Abhishek;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Koski Marja&option=202" target="_blank" rel="nofollow">Koski Marja;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Garcia Juan Antonio L.&option=202" target="_blank" rel="nofollow">Garcia Juan Antonio L.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Takaki Yoshihiro&option=202" target="_blank" rel="nofollow">Takaki Yoshihiro;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Yokokawa Taichi&option=202" target="_blank" rel="nofollow">Yokokawa Taichi;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Nunoura Takuro&option=202" target="_blank" rel="nofollow">Nunoura Takuro;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Elisabeth Nathalie H.&option=202" target="_blank" rel="nofollow">Elisabeth Nathalie H.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Sintes Eva&option=202" target="_blank" rel="nofollow">Sintes Eva;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Herndl Gerhard J.&option=202" target="_blank" rel="nofollow">Herndl Gerhard J.;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Department of Limnology and OceanographyCenter of Functional Ecology University of Vienna Althanstrasse 141090 Vienna Austria;</p> <p>Department of Limnology and OceanographyCenter of Functional Ecology University of Vienna Althanstrasse 141090 Vienna Austria;</p> <p>National Institute for Aquatic Resources Section for Oceans and ArcticTechnical University of Denmark Kavalergaarden 62920 Charlottenlund Denmark;</p> <p>Department of Limnology and OceanographyCenter of Functional Ecology University of Vienna Althanstrasse 141090 Vienna Austria;</p> <p>Department of Subsurface Geobiological Analysis and ResearchJapan Agency for Marine‐Earth Science and Technology (JAMSTEC) Natushima 2‐15Yokosuka Kanagawa 237‐0061 Japan;</p> <p>Department of Subsurface Geobiological Analysis and ResearchJapan Agency for Marine‐Earth Science and Technology (JAMSTEC) Natushima 2‐15Yokosuka Kanagawa 237‐0061 Japan;</p> <p>Department of Subsurface Geobiological Analysis and ResearchJapan Agency for Marine‐Earth Science and Technology (JAMSTEC) Natushima 2‐15Yokosuka Kanagawa 237‐0061 Japan;</p> <p>Department of Limnology and OceanographyCenter of Functional Ecology University of Vienna Althanstrasse 141090 Vienna Austria;</p> <p>Department of Limnology and OceanographyCenter of Functional Ecology University of Vienna Althanstrasse 141090 Vienna Austria;</p> <p>Department of Limnology and OceanographyCenter of Functional Ecology University of Vienna Althanstrasse 141090 Vienna Austria;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li> <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span> <a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学 ;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 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