Characterization of the human DNA gut virome across populations with different subsistence strategies and geographical origin

Rampelli Simone; Turroni Silvia; Schnorr Stephanie L.; Soverini Matteo; Quercia Sara; Barone Monica; Castagnetti Andrea; Biagi Elena; Gallinella Giorgio; Brigidi Patrizia; Candela Marco

摘要

Summary >It is a matter of fact that the human gut microbiome also includes a non‐bacterial fraction represented by eukaryotic cells and viruses. To further explore the gut microbiome variation in human populations, here we characterized the human DNA viral community from publicly available gut metagenome data sets from human populations with different geographical origin and lifestyle. In particular, such data sets encompass microbiome information from two western urban societies (USA and Italy), as well as two traditional hunter‐gatherer communities (the Hadza from Tanzania and Matses from Peru) and one pre‐agricultural tribe (Tunapuco from Peru). Our results allowed for the first taxonomic reconstruction of the complex viral metacommunities within the human gut. The core virome structure included herpesviruses, papillomaviruses, polyomaviruses, adenoviruses and anelloviruses. Using Random Forests and a co‐occurrence analysis approach, we identified the viruses that distinguished populations according to their geographical origin and/or lifestyle. This paves the way for new research aimed at investigating the biological role of the gut virome in human physiology, and the importance of our viral counterpart in the microbiome‐host co‐evolutionary process. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span>None </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" > 著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology 》</a> <b style="margin: 0 2px;">|</b><span>2017年第11期</span><b style="margin: 0 2px;">|</b> <span>共8页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Rampelli Simone&option=202" target="_blank" rel="nofollow">Rampelli Simone;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Turroni Silvia&option=202" target="_blank" rel="nofollow">Turroni Silvia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Schnorr Stephanie L.&option=202" target="_blank" rel="nofollow">Schnorr Stephanie L.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Soverini Matteo&option=202" target="_blank" rel="nofollow">Soverini Matteo;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Quercia Sara&option=202" target="_blank" rel="nofollow">Quercia Sara;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Barone Monica&option=202" target="_blank" rel="nofollow">Barone Monica;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Castagnetti Andrea&option=202" target="_blank" rel="nofollow">Castagnetti Andrea;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Biagi Elena&option=202" target="_blank" rel="nofollow">Biagi Elena;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Gallinella Giorgio&option=202" target="_blank" rel="nofollow">Gallinella Giorgio;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Brigidi Patrizia&option=202" target="_blank" rel="nofollow">Brigidi Patrizia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Candela Marco&option=202" target="_blank" rel="nofollow">Candela Marco;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Anthropology Laboratories of Molecular Anthropology and Microbiome ResearchUniversity of OklahomaNorman OK USA;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li> <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span> <a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学 ;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/academic-journal-cn_journal-geographical-sciences_thesis/0201252865192.html">Population geography in China since the 1980s:Forging the links between population 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Xin JIA123</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Harry F.LEE4&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,Harry F.LEE4</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Mengchun CUI1&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,Mengchun CUI1</a> <span> <a href="/journal-cn-55030/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 中国科学 </a> </span> <span> . 2019</span><span> ,第002期</span> </span> </div> </li> </ul> <ul style="display: none;"> <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/patent-detail/06130423617519.html">Method and kit for determining the geographic or population origin of a human</a> <b>[P]</b> . <span> 外国专利：  JP4841104B2 </span> <span> . 2011-12-21</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> 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