首页> 外文期刊>Biochemical and Biophysical Research Communications >IPGWAS: An integrated pipeline for rational quality control and association analysis of genome-wide genetic studies
【24h】

IPGWAS: An integrated pipeline for rational quality control and association analysis of genome-wide genetic studies

机译:IPGWAS:一种综合管线,用于基因组遗传学研究的理性质量控制与关联分析

获取原文
获取原文并翻译 | 示例
           

摘要

Large numbers of samples and marker loci were tested for association in genome-wide association studies (GWAS). Hence, quality control (QC) by removing individuals or markers with low genotyping quality is of utmost importance to minimize potential false positive associations. IPGWAS was developed to facilitate the identification of the rational thresholds in QC of GWAS datasets, association analysis, Manhattan plot, quantile-quantile (QQ) plot, and format conversion for genetic analyses, such as meta-analysis, genotype phasing, and imputation. IPGWAS is a multiplatform application written in Perl with a graphical user interface (GUI) and available for free at http://sourceforge.net/projects/ipgwas/.
机译:测试大量样品和标记基因座在基因组 - 宽协会研究(GWAS)中进行关联。 因此,通过去除具有低基因分型质量的个体或标记来最重要的是,质量控制(QC)最重要的是,最大限度地减少潜在的假阳性态度。 开发了IPGWA,以便于鉴定GWAS数据集,关联分析,曼哈顿图,定量定量(QQ)图的QC中的合理阈值,以及遗传分析的格式转化,例如荟萃分析,基因型序列和归属。 IPGWA是用图形用户界面(GUI)用Perl编写的多平台应用程序,并免费提供http://sourceforge.net/projects/ipgwas/。

著录项

相似文献

  • 外文文献
  • 中文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号