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Proposed BioRepository platform solution for the ALS research community

机译:针对ALS研究社区的拟议BioRepository平台解决方案

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摘要

ALS is a rare disorder whose cause and pathogenesis is largely unknown (1). There is a recognized need to develop biomarkers for ALS to better understand the disease, expedite diagnosis and to facilitate therapy development. Collaboration is essential to obtain a sufficient number of samples to allow statistically meaningful studies. The availability of high quality biological specimens for research purposes requires the development of standardized methods for collection, long-term storage, retrieval and distribution of specimens. The value of biological samples to scientists and clinicians correlates with the completeness and relevance of phenotypical and clinical information associated with the samples (2,3). While developing a secure Web-based system to manage an inventory of multi-site BioRepositories, algorithms were implemented to facilitate ad hoc parametric searches across heterogeneous data sources that contain data from clinical trials and research studies. A flexible schema for a barcode label was introduced to allow association of samples to these data. The ALSBank? BioRepository platform solution for managing biological samples and associated data is currently deployed by the Northeast ALS Consortium (NEALS). The NEALS Consortium and the Massachusetts General Hospital (MGH) Neurology Clinical Trials Unit (NCTU) support a network of multiple BioBanks, thus allowing researchers to take advantage of a larger specimen collection than they might have at an individual institution. Standard operating procedures are utilized at all collection sites to promote common practices for biological sample integrity, quality control and associated clinical data. Utilizing this platform, we have created one of the largest virtual collections of ALS-related specimens available to investigators studying ALS.
机译:ALS是一种罕见的疾病,其病因和发病机理尚不清楚(1)。公认需要开发用于ALS的生物标记物,以更好地了解疾病,加快诊断并促进治疗的发展。要获得足够数量的样本以进行具有统计意义的研究,协作必不可少。为了获得高质量的生物样本用于研究目的,需要开发用于收集,长期储存,检索和分配样本的标准化方法。生物样品对科学家和临床医生的价值与与样品相关的表型和临床信息的完整性和相关性相关(2,3)。在开发基于Web的安全系统以管理多站点BioRepository的清单时,实施了一些算法以促进跨异构数据源的临时参数搜索,这些异构数据源包含来自临床试验和研究的数据。引入了条形码标签的灵活方案,以允许将样本与这些数据关联。 ALSBank?东北ALS联盟(NEALS)当前正在部署用于管理生物样本和相关数据的BioRepository平台解决方案。 NEALS联盟和马萨诸塞州总医院(MGH)神经病学临床试验部门(NCTU)支持由多个BioBanks组成的网络,从而使研究人员能够利用比单独机构更大的样本收集空间。所有采集地点均采用标准操作程序,以促进生物样品完整性,质量控制和相关临床数据的通用做法。利用该平台,我们创建了ALS相关标本的最大虚拟集合之一,可供研究ALS的研究人员使用。

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