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hybriddetectivehybriddetective : A workflow and package to facilitate the detection of hybridization using genomic data in rr

机译:混合划分混合:一个工作流程和包,以便使用

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Abstract > The ability to detect and characterize hybridization in nature has long been of interest to many fields of biology and often has direct implications for wildlife management and conservation. The capacity to identify the presence of hybridization, and quantify the numbers of individuals belonging to different hybrid classes, permits inference on the magnitude of, and timescale over which, hybridization has been or is occurring. Here, we present an <sc>r</sc> package and associated workflow developed for the detection, with estimates of efficiency and accuracy, of multigenerational hybrid individuals using genetic or genomic data in conjunction with the program <sc>newhybrids</sc> . This package includes functions for the identification and testing of diagnostic panels of markers, the simulation of multigenerational hybrids, and the quantification and visualization of the efficiency and accuracy with which hybrids can be detected. Overall, this package delivers a streamlined hybrid analysis platform, providing improvements in speed, ease of use and repeatability over current ad hoc approaches. The latest version of the package and associated documentation are available on GitHub ( <url href="https://github.com/bwringe/hybriddetective">https://github.com/bwringe/hybriddetective</url> ). </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译:</span><abstract xmlns =“http://www.wiley.com/namespaces/wiley”type =“main”xml:id =“men12704-abs-0001”> <标题类型=“main”>抽象</ title> < p>在自然中检测和表征杂交的能力长期以来对许多生物领域感兴趣,并且通常对野生动物管理和保护具有直接影响。识别杂交存在的能力,并量化属于不同混合类别的个体的数量,允许推断对其杂交或正在发生的杂交的幅度。在这里,我们介绍了一种<sc> r </ sc>包和相关的工作流程,用于检测的效率和准确性估计,使用遗传或基因组数据与程序<sc> newhybrids </ sc一起使用遗传或基因组数据>。该包包括用于标记的诊断面板的函数,多核混合动力车的模拟以及可以检测混合动力车的效率和准确性的量化和可视化的功能。总的来说,该包提供了简化的混合分析平台,提供了对当前临时方法的速度,易用性和可重复性的改进。 Github上有最新版本的包和相关文档(<url href =“https://github.com/bwringe/hybriddetective”> https://github.com/bwringe/hybriddetective </ url>)。 </ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" >著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-25257/'>《Molecular ecology resources》</a> <b style="margin: 0 2px;">|</b><span>2017年第6期</span><b style="margin: 0 2px;">|</b><span>共10页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Wringe Brendan F.&option=202" target="_blank" rel="nofollow">Wringe Brendan F.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Stanley Ryan R. E.&option=202" target="_blank" rel="nofollow">Stanley Ryan R. E.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Jeffery Nicholas W.&option=202" target="_blank" rel="nofollow">Jeffery Nicholas W.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Anderson Eric C.&option=202" target="_blank" rel="nofollow">Anderson Eric C.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Bradbury Ian R.&option=202" target="_blank" rel="nofollow">Bradbury Ian R.;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Salmonids SectionNorthwest Atlantic Fisheries CentreSt. John's NL Canada;</p> <p>Coastal Ecosystem Sciences DivisionBedford Institute of Oceanography1 Challenger Drive Dartmouth NS Canada;</p> <p>Salmonids SectionNorthwest Atlantic Fisheries CentreSt. John's NL Canada;</p> <p>Fisheries Ecology DivisionSouthwest Fisheries Science CenterSanta Cruz CA USA;</p> <p>Salmonids SectionNorthwest Atlantic Fisheries CentreSt. John's NL Canada;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li > <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span><a href="https://www.zhangqiaokeyan.com/clc/179.html" title="分子生物学">分子生物学;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=assignment tests&option=203" rel="nofollow">assignment tests;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=hybrid&option=203" rel="nofollow">hybrid;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=introgression&option=203" rel="nofollow">introgression;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=population genetics&option=203" rel="nofollow">population genetics;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=population structure&option=203" rel="nofollow">population structure;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=simulation&option=203" rel="nofollow">simulation;</a> </p> <div class="translation"> 机译:分配试验;杂交;迟发;人口遗传学;人口结构;模拟; </div> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023742913.html"><sc xmlns="http://www.wiley.com/namespaces/wiley">hybriddetective</sc>hybriddetective : A workflow and package to facilitate the detection of hybridization using genomic data in <sc xmlns="http://www.wiley.com/namespaces/wiley">r</sc>r</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Wringe Brendan F.&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Wringe Brendan F.,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Stanley Ryan R. 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By Iwao Ojima (Editor)Wiley-VCH: New York (http://www.wiley.com/). 2000. Pages: XIV 864 Pages Hardcover. Price: 169.- Euro / 330.54 DM / 294.- SFR. ISBN: 0-471-29805-0</a> <b>[O] </b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> </a> <span>2001</span> </span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:催化不对称合成第二版。奥利马(Iwao Ojima)(编辑)Wiley-VCH:纽约(http://www.wiley.com/)。 2000。页数:XIV864页精装。价格:169.-欧元/330.54 DM / 294.- SFR。国际标准书号(ISBN):0-471-29805-0</span> </p> </li> <li> <div> <b>7. </b><a class="enjiyixqcontent" href="/open-access_resources_thesis/01000124899118.html">σ and <mml:math altimg="si1.gif" overflow="scroll" xmlns:xocs="http://www.elsevier.com/xml/xocs/dtd" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.elsevier.com/xml/ja/dtd" xmlns:ja="http://www.elsevier.com/xml/ja/dtd" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:tb="http://www.elsevier.com/xml/common/table/dtd" xmlns:sb="http://www.elsevier.com/xml/common/struct-bib/dtd" xmlns:ce="http://www.elsevier.com/xml/common/dtd" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:cals="http://www.elsevier.com/xml/common/cals/dtd"><mml:msub><mml:mi>f</mml:mi><mml:mn>0</mml:mn></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mn>980</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:math> substructures from <mml:math altimg="si2.gif" overflow="scroll" xmlns:xocs="http://www.elsevier.com/xml/xocs/dtd" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.elsevier.com/xml/ja/dtd" xmlns:ja="http://www.elsevier.com/xml/ja/dtd" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:tb="http://www.elsevier.com/xml/common/table/dtd" xmlns:sb="http://www.elsevier.com/xml/common/struct-bib/dtd" xmlns:ce="http://www.elsevier.com/xml/common/dtd" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:cals="http://www.elsevier.com/xml/common/cals/dtd"><mml:mi>γ</mml:mi><mml:mi>γ</mml:mi><mml:mo>→</mml:mo><mml:mi>π</mml:mi><mml:mi>π</mml:mi></mml:math>, <mml:math altimg="si3.gif" overflow="scroll" xmlns:xocs="http://www.elsevier.com/xml/xocs/dtd" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.elsevier.com/xml/ja/dtd" xmlns:ja="http://www.elsevier.com/xml/ja/dtd" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:tb="http://www.elsevier.com/xml/common/table/dtd" xmlns:sb="http://www.elsevier.com/xml/common/struct-bib/dtd" xmlns:ce="http://www.elsevier.com/xml/common/dtd" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:cals="http://www.elsevier.com/xml/common/cals/dtd"><mml:mi>J</mml:mi><mml:mo stretchy="false">/</mml:mo><mml:mi>ψ</mml:mi><mml:mo>,</mml:mo><mml:mi>ϕ</mml:mi></mml:math> radiative and <mml:math altimg="si4.gif" overflow="scroll" xmlns:xocs="http://www.elsevier.com/xml/xocs/dtd" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.elsevier.com/xml/ja/dtd" xmlns:ja="http://www.elsevier.com/xml/ja/dtd" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:tb="http://www.elsevier.com/xml/common/table/dtd" xmlns:sb="http://www.elsevier.com/xml/common/struct-bib/dtd" xmlns:ce="http://www.elsevier.com/xml/common/dtd" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:cals="http://www.elsevier.com/xml/common/cals/dtd"><mml:msub><mml:mi>D</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:math> semi-leptonic decays</a> <b>[O] </b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=G. Mennessier&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">G. Mennessier,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=S. Narison&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">S. Narison,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=X.-G. Wang&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">X.-G. Wang </a> <span>2011</span> </span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:σ和<MML:数学altimg = “si1.gif” 溢出= “滚动” 的xmlns:xocs = “http://www.elsevier.com/xml/xocs/dtd” 的xmlns:XS =“HTTP:// WWW。 w3.org/2001/XMLSchema”的xmlns:的xsi = “http://www.w3.org/2001/XMLSchema-instance” 的xmlns = “http://www.elsevier.com/xml/ja/dtd” 的xmlns: JA = “http://www.elsevier.com/xml/ja/dtd” 的xmlns:MML = “http://www.w3.org/1998/Math/MathML” 的xmlns:TB =“HTTP:// WWW .elsevier.com / XML /普通/表/ DTD “的xmlns:SB = ”http://www.elsevier.com/xml/common/struct-bib/dtd“ 的xmlns:CE =” HTTP://www.elsevier的.com / XML /普通/ DTD “的xmlns:的xlink = ”http://www.w3.org/1999/xlink“ 的xmlns:CALS =” http://www.elsevier.com/xml/common/cals/dtd “> <MML:MSUB> <MML:MI>˚F</ MML:MI> <MML:MN> 0 </ MML:MN> </ MML:MSUB> <MML:MO伸缩性=” 假“>(</ MML:MO> <MML:MN> 980 </ MML:MN> <MML:MO伸缩性= “假”>)</ MML:MO> </ MML:数学>从<MML子结构:数学altimg =“SI2。 GIF”溢出= “滚动” 的xmlns:xocs = “http://www.elsevier.com/xml/xocs/dtd” 的xmlns:XS = “http://www.w3.org/2001/XMLSchema” 的xmlns:的xsi = “http://www.w3.org/2001/XMLSchema-instance” 的xmlns =“HTTP://www.elsevier。 COM / XML / JA / DTD”的xmlns:JA = “http://www.elsevier.com/xml/ja/dtd” 的xmlns:MML = “http://www.w3.org/1998/Math/MathML”的xmlns:TB = “http://www.elsevier.com/xml/common/table/dtd” 的xmlns:SB = “http://www.elsevier.com/xml/common/struct-bib/dtd” 的xmlns: CE = “http://www.elsevier.com/xml/common/dtd” 的xmlns:的xlink = “http://www.w3.org/1999/xlink” 的xmlns:CALS =“HTTP://www.elsevier的.com / XML /普通/ CALS / DTD“> <MML:MI>γ</ MML:MI> <MML:MI>γ</ MML:MI> <MML:MO>→</ MML:MO> <MML :MI>π</ MML:MI> <MML:MI>π</ MML:MI> </ MML:数学>,<MML:数学altimg = “si3.gif” 溢出= “滚动” 的xmlns:xocs =” http://www.elsevier.com/xml/xocs/dtd “的xmlns:XS = ”http://www.w3.org/2001/XMLSchema“ 的xmlns:的xsi =” http://www.w3.org/ 2001 / XMLSchema的实例”的xmlns = “http://www.elsevier.com/xml/ja/dtd” 的xmlns:JA = “http://www.elsevier.com/xml/ja/dtd” 的xmlns:MML = “http://www.w3.org/1998/Math/MathML” 的xmlns:TB = “http://www.elsevier.com/xml/common/table/dtd” 的xmlns:SB =“HTTP:// WWW .elsevier.com / XML /普通/结构-围兜/ DTD “的xmlns:CE = ”http://www.elsevier.com/xml/common/dtd“ 的xmlns:的xlink =” HTTP://www.w 3.org/1999/xlink”的xmlns:CALS = “http://www.elsevier.com/xml/common/cals/dtd”> <MML:MI>Ĵ</ MML:MI> <MML:MO =伸缩性“假”> / </ MML:MO> <MML:MI>ψ</ MML:MI> <MML:MO>,</ MML:MO> <MML:MI>φ</ MML:MI> </ MML :数学>辐射和<MML:数学altimg = “si4.gif” 溢出= “滚动” 的xmlns:xocs = “http://www.elsevier.com/xml/xocs/dtd” 的xmlns:XS =“HTTP:/ /www.w3.org/2001/XMLSchema “的xmlns:的xsi = ”http://www.w3.org/2001/XMLSchema-instance“ 的xmlns =” http://www.elsevier.com/xml/ja/dtd “的xmlns:JA =” http://www.elsevier.com/xml/ja/dtd “的xmlns:MML = ”http://www.w3.org/1998/Math/MathML“ 的xmlns:TB =” HTTP: //www.elsevier.com/xml/common/table/dtd “的xmlns:SB = ”http://www.elsevier.com/xml/common/struct-bib/dtd“ 的xmlns:CE =” HTTP:// www.elsevier.com/xml/common/dtd “的xmlns:的xlink = ”http://www.w3.org/1999/xlink“ 的xmlns:CALS =” http://www.elsevier.com/xml/common/ CALS / DTD“> <MML:MSUB> <MML:MI> d </ MML:MI> <MML:MI>取值</ MML:MI> </ MML:MSUB> </ MML:数学>半轻子衰变</span> </p> </li> </ul> <ul style="display: none;"> <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/academic-journal-cn_aeronautical-manufacturing-technology_thesis/0201297345566.html">伊斯卡ISCARMF铣刀使用中速进给提高金属去除效率</a> <b>[J]</b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=良辰&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 良辰</a> <span> <a href="/journal-cn-9908/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 航空制造技术 </a> </span> <span> . 2010</span><span>,第11期</span> </span> </div> </li> </ul> <ul style="display: none;"> <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/patent-detail/06130429134558.html">HTTP request processing method for accessing web page in e.g. subscriber identity module card, of electronic system, involves decompressing loaded data, forming body of HTTP response with decompressed data, and transmitting HTTP response</a> <b>[P]</b> . <span> 外国专利: <!-- 法国专利: --> FR2924295A1 </span> <span> . 2009-05-29</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:用于访问网页的HTTP请求处理方法电子系统的用户识别模块卡涉及对加载的数据进行解压缩,使用解压缩后的数据形成HTTP响应主体以及传输HTTP响应 </span> </p> </li> <li> <div> <b>2. </b><a class="enjiyixqcontent" href="/patent-detail/06130499905028.html">Data Storage System Employing Dummy Namespaces For Discovery of NVMe Namespace Groups as Protocol Endpoints</a> <b>[P]</b> . <span> 外国专利: <!-- --> US2021132972A1 </span> <span> . 2021-05-06</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:数据存储系统采用虚拟名称空间,用于发现NVME命名空间组作为协议端点 </span> </p> </li> <li> <div> <b>3. </b><a class="enjiyixqcontent" href="/patent-detail/06130501188017.html">Data storage system employing dummy namespaces for discovery of NVMe namespace groups as protocol endpoints</a> <b>[P]</b> . <span> 外国专利: <!-- --> US11200082B2 </span> <span> . 2021-12-14</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:使用虚拟命名空间的数据存储系统发现NVME命名空间组作为协议端点 </span> </p> </li> </ul> </div> </div> </div> <div class="theme cardcommon" style="overflow: auto;display:none"> <h3 class="all_title" id="enpatent55">相关主题</h3> <ul id="subject"> </ul> </div> </div> </div> </div> <div class="right rightcon"> <div class="details_img cardcommon clearfix" style="margin-bottom: 10px;display:none;" > </div> </div> </div> <div id="thesis_get_original1" class="downloadBth" style="bottom: 19px;z-index: 999;" 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