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Complete genome sequence of the marine Rhodococcus sp H-CA8f isolated from Comau fjord in Northern Patagonia, Chile

机译:从智利北巴塔哥尼亚北塔哥尼亚州北巴德的康瑙峡湾隔绝的海洋rhodococcus sp h-ca8f的完整基因组序列

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摘要

Rhodococcus sp. H-CA8f was isolated from marine sediments obtained from the Comau fjord, located in Northern Chilean Patagonia. Whole-genome sequencing was achieved using PacBio RS II platform, comprising one closed, complete chromosome of 6,19 Mbp with a 62.45% G + C content. The chromosome harbours several metabolic pathways providing a wide catabolic potential, where the upper biphenyl route is described. Also, Rhodococcus sp. H-CA8f bears one linear mega-plasmid of 301 Kbp and 62.34% of G + C content, where genomic analyses demonstrated that it is constituted mostly by putative ORFs with unknown functions, representing a novel genetic feature. These genetic characteristics provide relevant insights regarding Chilean marine actinobacterial strains.
机译:rhodococcus sp。 H-CA8F从位于智利北角北部的Comau Fjord获得的海洋沉积物中分离出来。 使用PACBIO RS II平台实现全基因组测序,其中包含一个封闭的,完整的6,19 MBP的染色体,具有62.45%G + C含量。 染色体竖琴若干代谢途径提供宽的分解代谢电位,其中描述了上联烯基途径。 此外,rhodococcus sp。 H-CA8F承受301 kbp的一个线性兆质质,62.34%的G + C含量,其中基因组分析证明它主要由具有未知功能的推定ORF构成,代表新的遗传特征。 这些遗传特征为智利海洋肌动菌菌株提供了相关见解。

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  • 来源
    《Marine genomics》 |2018年第2018期|共5页
  • 作者单位

    Univ Tecn Federico Santa Marla Lab Microbiol Mol &

    Biotecnol Ambiental Dept Quim Valparaiso Chile;

    Univ Gothenburg Sahlgrenska Acad Dept Infect Dis Gothenburg Sweden;

    Univ Gothenburg Sahlgrenska Acad Dept Infect Dis Gothenburg Sweden;

    Univ Andres Bello Ctr Bioinformat &

    Integrat Biol Fac Ciencias Biol Santiago Chile;

    Univ Andres Bello Ctr Bioinformat &

    Integrat Biol Fac Ciencias Biol Santiago Chile;

    Univ Tecn Federico Santa Marla Lab Microbiol Mol &

    Biotecnol Ambiental Dept Quim Valparaiso Chile;

    Univ Andres Bello Ctr Bioinformat &

    Integrat Biol Fac Ciencias Biol Santiago Chile;

    Univ Gothenburg Sahlgrenska Acad Dept Infect Dis Gothenburg Sweden;

    Univ Tecn Federico Santa Marla Lab Microbiol Mol &

    Biotecnol Ambiental Dept Quim Valparaiso Chile;

    Univ Tecn Federico Santa Marla Lab Microbiol Mol &

    Biotecnol Ambiental Dept Quim Valparaiso Chile;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 遗传学;
  • 关键词

    Rhodococcus; Marine actinobacteria; Comau fjord; Novel mega-plasmid; PacBio sequencing;

    机译:rhodococcus;海洋actinobacteria;Comau Fjord;新型巨型质粒;PACBIO测序;

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