Symbiosis of a P2‐family phage and deep‐sea        <i >Shewanella putrefaciensShewanella putrefaciens

Liu Xiaoxiao; Tang Kaihao; Zhang Dali; Li Yangmei; Liu Zhe; Yao Jianyun; Wood Thomas K.; Wang Xiaoxue

摘要

Summary > Almost all bacterial genomes harbour prophages, yet it remains unknown why prophages integrate into tRNA‐related genes. Approximately 1/3 of Shewanella isolates harbour a prophage at the tmRNA ( ssrA ) gene. Here, we discovered a P2‐family prophage integrated at the 3′‐end of ssrA in the deep‐sea bacterium S . putrefaciens . We found that ~0.1% of host cells are lysed to release P2 constitutively during host growth. P2 phage production is induced by a prophage‐encoded Rep protein and its excision is induced by the Cox protein. We also found that P2 genome excision leads to the disruption of wobble base pairing of SsrA due to site‐specific recombination, thus disrupting the trans‐translation function of SsrA. We further demonstrated that P2 excision greatly hinders growth in seawater medium and inhibits biofilm formation. Complementation with a functional SsrA in the P2‐excised strain completely restores the growth defects in seawater medium and partially restores biofilm formation. Additionally, we found that products of the P2 genes also increase biofilm formation. Taken together, this study illustrates a symbiotic relationship between P2 and its marine host, thus providing multiple benefits for both sides when a phage is integrated but suffers from reduced fitness when the prophage is excised. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span><Abstract Type =“Main”XML：Lang =“en”> <标题类型=“main”>概述</ title> >几乎所有细菌基因组港口预言，但是预言纳入与TRNA相关基因的原因仍然不明。大约1/3的咽喉</ i>分离出TMRNA（ SSRA </ I>）基因的含量。在这里，我们发现了在深海细菌中的3'-末端集成的P2家族预兆在深海细菌中 S </ i>。 putrefaciens </ i>。我们发现在宿主生长期间溶解〜0.1％的宿主细胞以释放P2。 P2噬菌体产量由先知编码的REP蛋白诱导，其切除由COX蛋白诱导。我们还发现P2基因组切除由于位点特异性重组而导致SSRA的摆动碱基配对的破坏，从而破坏了SSRA的逆算函数。我们进一步证明了P2切除极大地阻碍了海水介质的生长并抑制生物膜形成。 P2切除株中功能SSRA的互补完全恢复海水介质中的生长缺陷，部分恢复生物膜形成。此外，我们发现P2基因的产品也增加了生物膜形成。这项研究占据了P2和其海洋宿主之间的共生关系，从而在噬菌体被整合时为两侧提供多种益处，但是在切除前试验时遭受降低的健康。 </ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" >著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology》</a> <b style="margin: 0 2px;">|</b><span>2019年第11期</span><b style="margin: 0 2px;">|</b><span>共21页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Liu Xiaoxiao&option=202" target="_blank" rel="nofollow">Liu Xiaoxiao;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Tang Kaihao&option=202" target="_blank" rel="nofollow">Tang Kaihao;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Zhang Dali&option=202" target="_blank" rel="nofollow">Zhang Dali;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Li Yangmei&option=202" target="_blank" rel="nofollow">Li Yangmei;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Liu Zhe&option=202" target="_blank" rel="nofollow">Liu Zhe;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Yao Jianyun&option=202" target="_blank" rel="nofollow">Yao Jianyun;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Wood Thomas K.&option=202" target="_blank" rel="nofollow">Wood Thomas K.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Wang Xiaoxue&option=202" target="_blank" rel="nofollow">Wang Xiaoxue;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Key Laboratory of Tropical Marine Bio‐resources and Ecology Guangdong Key Laboratory of Marine Materia MedicaRNAM Center for Marine Microbiology South China Sea Institute of Oceanology Chinese Academy of SciencesGuangzhou 510301 China;</p> <p>Key Laboratory of Tropical Marine Bio‐resources and Ecology Guangdong Key Laboratory of Marine Materia MedicaRNAM Center for Marine Microbiology South China Sea Institute of Oceanology Chinese Academy of SciencesGuangzhou 510301 China;</p> <p>Key Laboratory of Tropical Marine Bio‐resources and Ecology Guangdong Key Laboratory of Marine Materia MedicaRNAM Center for Marine Microbiology South China Sea Institute of Oceanology Chinese Academy of SciencesGuangzhou 510301 China;</p> <p>Key Laboratory of Tropical Marine Bio‐resources and Ecology Guangdong Key Laboratory of Marine Materia MedicaRNAM Center for Marine Microbiology South China Sea Institute of Oceanology Chinese Academy of SciencesGuangzhou 510301 China;</p> <p>Guangdong Provincial Center for Disease Control and PreventionGuangdong Provincial Institute of Public HealthGuangzhou 511430 China;</p> <p>Key Laboratory of Tropical Marine Bio‐resources and Ecology Guangdong Key Laboratory of Marine Materia MedicaRNAM Center for Marine Microbiology South China Sea Institute of Oceanology Chinese Academy of SciencesGuangzhou 510301 China;</p> <p>Department of Chemical EngineeringPennsylvania State UniversityUniversity Park PA 16802‐4400 USA;</p> <p>Key Laboratory of Tropical Marine Bio‐resources and Ecology Guangdong Key Laboratory of Marine Materia MedicaRNAM Center for Marine Microbiology South China Sea Institute of Oceanology Chinese Academy of SciencesGuangzhou 510301 China;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li > <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span><a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023229512.html">Symbiosis of a P2‐family phage and deep‐sea <i >Shewanella putrefaciensShewanella putrefaciens</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Liu Xiaoxiao&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Liu Xiaoxiao,</a> <a 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Grasel</a> <span> <a href="/journal-cn-40338/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 环境科学与工程 </a> </span> <span> . 2010</span><span>,第009期</span> </span> </div> </li> <li> <div> <b>6. </b><a class="enjiyixqcontent" href="/academic-conference-cn_meeting-43375_thesis/020222797357.html">pH对Shewanella putrefaciens CN32异化还原NO3-/NO2-和N2O释放的影响</a> <b>[C]</b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=范伟国&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 范伟国</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=孙舒&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,孙舒</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=孙科&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,孙科</a> <span> <a href="/conference-cn-43375/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 中国矿物岩石地球化学学会第17届学术年会 </a> <span> <span> . 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Symbiosis of a P2‐family phage and deep‐sea Shewanella putrefaciensShewanella putrefaciens

摘要