Metabolic versatility of a novel N <sub xmlns='http://www.wiley.com/namespaces/wiley'>2</sub>2 ‐fixing Alphaproteobacterium isolated from a marine oxygen minimum zone

Martínez‐Pérez Clara; Mohr Wiebke; Schwedt Anne; Dürschlag Julia; Callbeck Cameron M.; Schunck Harald; Dekaezemacker Julien; Buckner Caroline R. T.; Lavik Gaute; Fuchs Bernhard M.; Kuypers Marcel M. M.

摘要

Summary > The N <sub>2</sub> ‐fixing (diazotrophic) community in marine ecosystems is dominated by non‐cyanobacterial microorganisms. Yet, very little is known about their identity, function and ecological relevance due to a lack of cultured representatives. Here we report a novel heterotrophic diazotroph isolated from the oxygen minimum zone (OMZ) off Peru. The new species belongs to the genus Sagittula ( Rhodobacteraceae , Alphaproteobacteria ) and its capability to fix N <sub>2</sub> was confirmed in laboratory experiments. Genome sequencing revealed that it is a strict heterotroph with a high versatility in substrate utilization and energy acquisition mechanisms. Pathways for sulfide oxidation and nitrite reduction to nitrous oxide are encoded in the genome and might explain the presence throughout the Peruvian OMZ. The genome further indicates that this novel organism could be in direct interaction with other microbes or particles. NanoSIMS analyses were used to compare the metabolic potential of S. castanea with single‐cell activity in situ ; however, N <sub>2</sub> fixation by this diazotroph could not be detected at the isolation site. While the biogeochemical impact of S. castanea is yet to be resolved, its abundance and widespread distribution suggests that its potential to contribute to the marine N input could be significant at a larger geographical scale. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span><abstract xmlns =“http://www.wiley.com/namespaces/wiley”type =“main”xml：lang =“en”> <title type =“main”>摘要</ title> > n海洋生态系统中的<sub> 2 </ sub> -fixing（真正营养学）群落由非蓝杆菌微生物主导。然而，由于缺乏培养的代表，他们的身份，功能和生态相关性很少。在这里，我们报告了秘鲁的氧气最小区（OMZ）中分离的新型异养二位发生。新物种属于矢状属（乳酰杆菌菌，α-1）和其固定n <sub> 2 </ sub>的能力在实验室实验中。基因组测序表明，它是一种严格的异质，具有高通用性在基材利用和能量采集机制中。硫化物氧化和亚硝酸亚硝酸盐的途径在基因组中编码，并且可以解释整个秘鲁朱兹的存在。基因组进一步表明该新颖的生物可以与其他微生物或颗粒直接相互作用。使用纳米烃分析来比较 S的代谢潜力。 Castanea </ i>具有单细胞活动原位</ i>;然而，在隔离位点无法检测到这种重氮化的n <sub> 2 </ sub>固定。虽然 s的生物地球化学影响。 Castanea </ i>尚未得到解决，其丰富和广泛的分布表明，其对海洋N个投入贡献的潜力可能在更大的地理范围内显着。 </ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" > 著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology 》</a> <b style="margin: 0 2px;">|</b><span>2018年第2期</span><b style="margin: 0 2px;">|</b> <span>共14页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Martínez‐Pérez Clara&option=202" target="_blank" rel="nofollow">Martínez‐Pérez Clara;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Mohr Wiebke&option=202" target="_blank" rel="nofollow">Mohr Wiebke;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Schwedt Anne&option=202" target="_blank" rel="nofollow">Schwedt Anne;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Dürschlag Julia&option=202" target="_blank" rel="nofollow">Dürschlag Julia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Callbeck Cameron M.&option=202" target="_blank" rel="nofollow">Callbeck Cameron M.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Schunck Harald&option=202" target="_blank" rel="nofollow">Schunck Harald;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Dekaezemacker Julien&option=202" target="_blank" rel="nofollow">Dekaezemacker Julien;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Buckner Caroline R. T.&option=202" target="_blank" rel="nofollow">Buckner Caroline R. T.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Lavik Gaute&option=202" target="_blank" rel="nofollow">Lavik Gaute;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Fuchs Bernhard M.&option=202" target="_blank" rel="nofollow">Fuchs Bernhard M.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Kuypers Marcel M. M.&option=202" target="_blank" rel="nofollow">Kuypers Marcel M. M.;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Institute for General MicrobiologyUniversity of KielKiel Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> <p>Max Planck Institute for Marine MicrobiologyBremen Germany;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li> <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span> <a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学 ;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023229220.html">Metabolic versatility of a novel N <sub xmlns="http://www.wiley.com/namespaces/wiley">2</sub>2 ‐fixing Alphaproteobacterium isolated from a marine oxygen minimum zone</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Martínez‐Pérez Clara&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Martínez‐Pérez Clara,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Mohr Wiebke&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Mohr Wiebke,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Schwedt Anne&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Schwedt Anne,</a> <a href="/journal-foreign-22868/" target="_blank" rel="nofollow" class="tuijian_authcolor">Environmental microbiology .</a> <span>2018</span> <span>,第2期</span> </span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：新颖的n <sub xmlns =“http://www.wiley.com/namespaces/wiley”> 2 </ sub> 2 - 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Metabolic versatility of a novel N 22 ‐fixing Alphaproteobacterium isolated from a marine oxygen minimum zone

摘要

Metabolic versatility of a novel N ₂2 ‐fixing Alphaproteobacterium isolated from a marine oxygen minimum zone