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Reef invertebrate viromics: diversity, host specificity and functional capacity

机译:Reef无脊椎动物病毒学:多样性,宿主特异性和功能能力

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Summary > Recent metagenomic analyses have revealed a high diversity of viruses in the pelagic ocean and uncovered clear habitat‐specific viral distribution patterns. Conversely, similar insights into the composition, host specificity and function of viruses associated with marine organisms have been limited by challenges associated with sampling and computational analysis. Here, we performed targeted viromic analysis of six coral reef invertebrate species and their surrounding seawater to deliver taxonomic and functional profiles of viruses associated with reef organisms. Sponges and corals' host species‐specific viral assemblages with low sequence identity to known viral genomes. While core viral genes involved in capsid formation, tail structure and infection mechanisms were observed across all reef samples, auxiliary genes including those involved in herbicide resistance and viral pathogenesis pathways such as host immune suppression were differentially enriched in reef hosts. Utilising a novel OTU based assessment, we also show a prevalence of dsDNA viruses belonging to the Mimiviridae , Caudovirales and Phycodnaviridae in reef environments and further highlight the abundance of ssDNA viruses belonging to the Circoviridae , Parvoviridae , Bidnaviridae and Microviridae in reef invertebrates. These insights into coral reef viruses provide an important framework for future research into how viruses contribute to the health and evolution of reef organisms. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译:</span><Abstract XMLNS =“http://www.wiley.com/namespaces/wiley”type =“main”xml:lang =“en”> <title type =“main”>摘要</ title> >最近的Metagenomic分析揭示了岩石海洋中的病毒高度多样性,并发现了明确的栖息地特异性病毒分布模式。相反,与与海洋生物相关的组合物,宿主特异性和功能的相似见解受到与采样和计算分析相关的挑战的限制。在这里,我们对六珊瑚礁无脊椎动物及其周围海水进行了针对性病毒分析,以提供与珊瑚礁生物相关的病毒的分类和功能性谱。海绵和珊瑚的宿主物种特异性病毒组合,具有低序列同一性与已知的病毒基因组。虽然在所有Reef样品中观察到衣壳形成,尾部结构和感染机制的核心病毒基因,但包括参与除草剂抗性和病毒性发病机理途径的辅助基因,例如宿主免疫抑制,差异富集珊瑚礁宿主。利用新的基于OTU的评估,我们还显示出属于 Mimiviridae的DSDNA病毒的患病率,剖腹产, PhycodnaviRidae Phycodnaviridae </ i>进一步亮点属于昼夜系列的SsDNA病毒, Parvoviridae, Bidnaviridae </ i>和珊瑚礁中的 Microviridae </ i>。这些见解珊瑚礁病毒提供了一个重要的框架,用于将来研究病毒如何促进礁石生物的健康和演变。 </ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" > 著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology 》</a> <b style="margin: 0 2px;">|</b><span>2018年第6期</span><b style="margin: 0 2px;">|</b> <span>共17页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Laffy Patrick W.&option=202" target="_blank" rel="nofollow">Laffy Patrick W.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Wood‐Charlson Elisha M.&option=202" target="_blank" rel="nofollow">Wood‐Charlson Elisha M.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Turaev Dmitrij&option=202" target="_blank" rel="nofollow">Turaev Dmitrij;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Jutz Sabrina&option=202" target="_blank" rel="nofollow">Jutz Sabrina;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Pascelli Cecilia&option=202" target="_blank" rel="nofollow">Pascelli Cecilia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Botté Emmanuelle S.&option=202" target="_blank" rel="nofollow">Botté Emmanuelle S.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Bell Sara C.&option=202" target="_blank" rel="nofollow">Bell Sara C.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Peirce Tyler E.&option=202" target="_blank" rel="nofollow">Peirce Tyler E.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Weynberg Karen D.&option=202" target="_blank" rel="nofollow">Weynberg Karen D.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=van Oppen Madeleine J. H.&option=202" target="_blank" rel="nofollow">van Oppen Madeleine J. H.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Rattei Thomas&option=202" target="_blank" rel="nofollow">Rattei Thomas;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Webster Nicole S.&option=202" target="_blank" rel="nofollow">Webster Nicole S.;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Department of Microbiology and Ecosystem Science Division of Computational Systems BiologyUniversity of ViennaVienna Austria;</p> <p>Department of Microbiology and Ecosystem Science Division of Computational Systems BiologyUniversity of ViennaVienna Austria;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> <p>Department of Microbiology and Ecosystem Science Division of Computational Systems BiologyUniversity of ViennaVienna Austria;</p> <p>Australian Institute of Marine Science PMB 3Townsville QLD 4810 Australia;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li> <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span> <a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学 ;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023228604.html">Reef invertebrate viromics: diversity, host specificity and functional capacity</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Laffy Patrick W.&option=202" target="_blank" rel="nofollow" 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href="/conference-cn-17891/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 2008年全国海洋生物技术与创新药物学术会议 </a> <span> <span> . 2008</span> </span> </div> </li> <li> <div> <b>7. </b><a class="enjiyixqcontent" href="/academic-degree-domestic_mphd_thesis/020313729716.html">海州湾及邻近海域大型无脊椎动物群落结构及多样性的时空变化</a> <b>[A] </b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=张怡晶&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 张怡晶</a> <span> . 2013</span> </span> </div> </li> </ul> <ul style="display: none;"> <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/patent-detail/06120105059713.html">dsRNA 诱导的在甲壳动物和其它无脊椎动物中的特异性和非特异性免疫及其中所用的生物送递载体</a> <b>[P]</b> . <span> 中国专利: CN1860220A </span> <span> . 2006-11-08</span> </div> </li> <li> <div> <b>2. </b><a class="enjiyixqcontent" href="/patent-detail/06120112572318.html">一种基于湖泊湿地eDNA提取技术监测湿地野生脊椎动物多样性的方法</a> <b>[P]</b> . <span> 中国专利: CN112608987A </span> <span> . 2021-04-06</span> </div> </li> <li> <div> <b>3. </b><a class="enjiyixqcontent" href="/patent-detail/06130440136874.html">Isolated negative-sense single stranded rna virus, isolated or recombinant nucleic acid or its specific functional mpv fragment, vector, host cell, isolated or recombinant proteinaceous molecule or its specific functional mpv fragment, antigen, antibody, method for identifying a viral isolate as a mpv, viral isolate, methods for virologically and serologically diagnosing a mammalian mpv infection, diagnostic kit for diagnosing a mpv infection, uses of a virus, a nucleic acid, a vector, a cell host, a proteinaceous molecule or fragment thereof, an antigen, or an antibody, pharmaceutical composition, methods for treating or preventing an mpv infection and respiratory disease, and for obtaining an antiviral agent useful in the treatment of disease. of the respiratory tract, antiviral agent, use of a viral agent, methods for virologically diagnosing and serum logically a bird apv infection, use of a diagnostic test, and method for detecting an antibody directed against mpv in a sample</a> <b>[P]</b> . <span> 外国专利: <!-- --> BR0206591A </span> <span> . 2005-02-01</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:分离的负义单链RNA病毒,分离的或重组的核酸或其特定功能的mpv片段,载体,宿主细胞,分离的或重组的蛋白质分子或其特定的功能mpv片段,抗原,抗体,将病毒分离物鉴定为mpv,病毒分离物,用于病毒学和血清学诊断哺乳动物mpv感染的方法,用于诊断mpv感染的诊断试剂盒,病毒,核酸,载体,细胞宿主,蛋白质分子或其片段,抗原的用途,或抗体,药物组合物,用于治疗或预防mpv感染和呼吸道疾病以及获得可用于治疗疾病的抗病毒剂的方法。呼吸道,抗病毒药,病毒药的使用,禽apv感染的病毒学诊断和逻辑诊断方法,诊断测试的使用以及检测样品中针对mpv的抗体的方法 </span> </p> </li> <li> <div> <b>4. </b><a class="enjiyixqcontent" href="/patent-detail/06130406776046.html">Method for identifying a polypeptide having a functionality or specificity of binding desired, library of molecules of polinucleotu00eddeo,Method for generating a library of polynucleotides encoding, vector, host cell, antibody and method for generating a population of host cells</a> <b>[P]</b> . <span> 外国专利: <!-- --> BR112015000836A2 </span> <span> . 2017-12-12</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:鉴定具有所需结合功能或特异性的多肽的方法,多聚核苷酸分子文库,产生编码的多核苷酸文库的方法,载体,宿主细胞,抗体和产生宿主细胞群的方法 </span> </p> </li> <li> <div> <b>5. </b><a class="enjiyixqcontent" href="/patent-detail/06130461990846.html">SEQUENCE OF NUCLEIC ACID OF MONOCOTYLEDONEA THAT CODES A FUNCTIONAL ENZYME OF AHAS, FUNCTIONAL ENZYME OF AHAS, TRANSFORMATION VECTOR, HOSPEDER CELL, PLANT, MATURED WITH SPECIFIC RESISTANCE TO IMIDAZOLINONE, THE PROCESS TO CYLINDERIC RESIDENTIAL PROCESSES, RESERVE THE CYLINDER OF PLANTS WITH RESISTANCE SPECIFIC TO IMIDAZOLINONE, PROCESS OF SELECTION OF HOST CELLS, BUILDING ELEMENT OF NUCLEIC ACID, PROCESS FOR THE RELEASE OF AN ENZYME OF RESISTANCE AREAS SPECIFIES THE IMIDAZOLINON IN A HONEYCARE, IN A CELLAR</a> <b>[P]</b> . <span> 外国专利: <!-- --> BR9202950A </span> <span> . 1993-03-30</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译:编码单抗的腺苷酸,大肠埃希菌的耐药性,编码过程的单核苷酸多态性的编码方法咪唑啉酮,宿主细胞的选择过程,核酸的构建要素,用于释放抗性区域的酶的过程,用于在酒窖中确定蜜唑烷酮 </span> </p> </li> </ul> </div> </div> </div> <div class="theme cardcommon" style="overflow: auto;display:none"> <h3 class="all_title" id="enpatent55">相关主题</h3> <ul id="subject"> </ul> </div> </div> </div> </div> <div class="right rightcon"> <div class="details_img cardcommon clearfix" style="margin-bottom: 10px;display:none;" > </div> </div> </div> <div id="thesis_get_original1" class="downloadBth" style="bottom: 19px;z-index: 999;" onclick="ywcd('0704023228604','4',7,2,1,'',this,24)" class="delivery" prompt="010401" title="通过人工服务将文献原文发送至邮箱" >获取原文</div> <div class="journalsub-pop-up" style="display: none"> <div class="journal-sub"> <h2>期刊订阅</h2> <img 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