首页> 外文期刊>American Conchologist >Molecular analysis of threatened species of the freshwater snail genus Potamolithus (Prosobranchia: Truncatelloidea: Tateidae) in the Río de la Plata, Argentina
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Molecular analysis of threatened species of the freshwater snail genus Potamolithus (Prosobranchia: Truncatelloidea: Tateidae) in the Río de la Plata, Argentina

机译:淡水蜗牛属Potamolithus(Prosobranchia:Truncatelloidea:Tateidae)的威胁物种分子分析

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Molecular analyses were initiated from specimens of Potamolithus collected in January 2018 on Martín Garcia Island (Province of Buenos Aires). The specimens were first separated into five morphs according to shell shape and coloration, from which a foot fragment fixed in absolute alcohol was prepared from each specimen. The total genomic DNA was extracted, by the CTAB method for 15 specimens and by commercial kit for 14 specimens. The partial sequence of the mitochondrial cytochrome c oxidase subunit I (COI) gene was amplified by primers following Folmer et al. (1994). The amplification by Polymerase Chain Reaction (PCR) was performed in a final volume of 50 μl. The PCR products were purified using a Pure DNA-Clean Up kit (PB-L Bio-Logic Products) and the two DNA strands of the gene were directly sequenced in Macrogen Inc., Seoul, Korea. The resulting sequences were edited using the Chromas Lite and Bioedit software. They were then trimmed to eliminate primers and consensus sequences were compared with reference sequences deposited in GenBank. Sequence alignment was performed with Clustal X 2.0.12 software, optimized by visual inspection, and edited with a word processor. The genetic distance was then analyzed using the Neighbor-Joining algorithm, through the MEGA X program, using the Hasegawa-Kishino-Yano model. The maximum likelihood analysis was performed using the MEGA X program using the Hasegawa-Kishino-Yano model. In total, 23 COI sequences were obtained, which would correspond to 5 entities: (1) entity 1 and 2 correspond to P. agapetus (8 sequences) and P. buschii (4 sequences), both species previously cited for Martín Garcia Island and with registration of the COI gene in Genbank; (2) entity 3 corresponds anatomically with P. bisinuatus (7 sequences) -already mentioned for Martín Garcia, the first sequences obtained for this species; (3) entity 4 may correspond to P.
机译:从2018年1月在MartínGarcia岛(布宜诺斯艾利斯省)收集的Potamolithus标本开始分子分析。首先根据壳体形状和着色分为5个变形样品,从该样本中固定在绝对醇中固定的脚片段。通过CTAB方法通过CTAB方法和14个标本通过商业试剂盒提取总基因组DNA。通过对叶片等人的引物扩增了线粒体细胞色素C氧化酶亚基I(COI)基因的部分序列。 (1994)。通过聚合酶链反应(PCR)的扩增以终体积为50μL。使用纯DNA清洁试剂盒(PB-L生物逻辑产品)纯化PCR产物,并且在韩国首尔的Macrogen Inc.直接测序这两个DNA链。使用Chromas Lite和Bioedit软件编辑所得序列。然后将它们修剪成消除引物和共有序列与沉积在Genbank中的参考序列进行比较。使用Clustal x 2.0.12软件进行序列对齐,通过目视检查优化,并用文字处理器编辑。然后使用邻接算法通过Mega X程序使用Hasegawa-Kishino-yano模型来分析遗传距离。使用Mega X程序使用Hasegawa-Kishino-yano模型进行最大似然分析。得到总共23种COI序列,其对应于5个实体:(1)实体1和2对应于P.Agapetus(8序列)和P.Buschii(4个序列),这两个类似于MartínGarcia岛的物种都被引用在Genbank中的COI基因注册; (2)实体3对应于P.Bisinuatus(7序列)对MartínGarcia提到的第一个序列,对应于P. Bisinuatus(7序列)。 (3)实体4可以对应于P.

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