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Genetic characterization of suspected MODY patients in Tunisia by targeted next-generation sequencing

机译:靶向下一代测序的突尼斯怀疑患者的遗传特征

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摘要

AimsMaturity Onset Diabetes of the Young (MODY) is a monogenic form of diabetes with autosomal dominant inheritance pattern. The diagnosis of MODY and its subtypes is based on genetic testing. Our aim was investigating MODY by means of next-generation sequencing in the Tunisian population.MethodsWe performed a targeted sequencing of 27 genes known to cause monogenic diabetes in 11 phenotypically suspected Tunisian patients. We retained genetic variants passing filters of frequency in public databases as well as their probable effects on protein structures and functions evaluated by bioinformatics prediction tools.ResultsFive heterozygous variants were found in four patients. They include two mutations in HNF1A and GCK that are the causative genes of the two most prevalent MODY subtypes described in the literature. Other possible mutations, including novel frameshift and splice-site variants were identified in ABCC8 gene.ConclusionsOur study is the first to investigate the clinical application of targeted next-generation sequencing for the diagnosis of MODY in Africa. The combination of this approach with a filtering/prioritization strategy made a step towards the identification of MODY mutations in the Tunisian population.
机译:年轻的AIMSMATUSTUSTENSENSENSENSENSENSENS(MODY)的糖尿病是一种单一的糖尿病,具有常染色体显性遗传模式。暗型及其亚型的诊断基于遗传测试。我们的目标是通过突尼斯人群中的下一代测序来调查态度。乙二醇的靶向测序已知在11个表型疑似突尼斯患者中引起单体糖尿病。我们保留了在公共数据库中通过频率滤波器的遗传变体以及对由生物信息学预测工具评估的蛋白质结构和功能的可能影响。在四名患者中发现了杂合的杂合变体。它们包括HNF1A和GCK中的两个突变,这是文献中描述的两个最普遍的型亚型的致病基因。在ABCC8基因中鉴定出包括新型帧间和剪接部位变体的其他可能的突变。结论是第一个调查靶向下一代测序的临床应用,以便在非洲诊断均衡。这种方法与过滤/优先级排序策略的组合对突尼斯人群中的态度识别进行了识别。

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  • 来源
    《Acta diabetologica.》 |2019年第5期|共9页
  • 作者单位

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Fdn IRCCS Casa Sollievo Sofferenza Res Unit Metab &

    Cardiovasc Dis San Giovanni Rotondo Italy;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Fattouma Bourguiba Univ Hosp Monastir Tunisia;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Fdn IRCCS Casa Sollievo Sofferenza Res Unit Metab &

    Cardiovasc Dis San Giovanni Rotondo Italy;

    Fdn IRCCS Casa Sollievo Sofferenza Res Unit Metab &

    Cardiovasc Dis San Giovanni Rotondo Italy;

    IRCCS Casa Sollievo Sofferenza Unit Bioinformat San Giovanni Rotondo Italy;

    Inst Pasteur Tunis Cent Lab Med Biol BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Inst Pasteur Tunis Lab Transmiss Control &

    Immunobiol Infect BP 74 13 Pl Pasteur Tunis 1002;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Fdn IRCCS Casa Sollievo Sofferenza Res Unit Metab &

    Cardiovasc Dis San Giovanni Rotondo Italy;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

    Fdn IRCCS Casa Sollievo Sofferenza Res Unit Metab &

    Cardiovasc Dis San Giovanni Rotondo Italy;

    Inst Pasteur Tunis Lab Biomed Genom &

    Oncogenet BP 74 13 Pl Pasteur Tunis 1002 Tunisia;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 内科学;
  • 关键词

    MODY; Genetic testing; Next-generation sequencing; Targeted gene sequencing;

    机译:型号;遗传检测;下一代测序;靶向基因测序;

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