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首页> 外文期刊>The Journal of Chemical Physics >Inhibition of DNA ejection from bacteriophage by Mg~2 counterions
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Inhibition of DNA ejection from bacteriophage by Mg~2 counterions

机译:Mg〜2抗衡离子抑制噬菌体DNA喷射

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摘要

The problem of inhibiting viral DNA ejection from bacteriophages by multivalent counterions, specifically Mg~2 counterions, is studied. Experimentally, it is known that MgSO4 salt has a strong and nonmonotonic effect on the amount of DNA ejected. There exists an optimal concentration at which the minimum amount of DNA is ejected from the virus. At lower or higher concentrations, more DNA is ejected from the capsid. We propose that this phenomenon is the result of DNA overcharging by Mg~2 multivalent counterions. As Mg~2 concentration increases from zero, the net charge of DNA changes from negative to positive. The optimal inhibition corresponds to the Mg~2 concentration where DNA is neutral. At lower/higher concentrations, DNA genome is charged. It prefers to be in solution to lower its electrostatic self-energy, which consequently leads to an increase in DNA ejection. By fitting our theory to available experimental data, the strength of DNA-DNA short range attraction energies, mediated by Mg~2, is found to be -0.004 kBT per nucleotide base. This and other fitted parameters agree well with known values from other experiments and computer simulations. The parameters are also in agreement qualitatively with values for tri- and tetravalent counterions.
机译:研究了多价抗衡离子,特别是Mg〜2抗衡离子,抑制病毒从噬菌体中射出的问题。在实验上,已知MgSO4盐对喷射的DNA量具有强烈且非单调的作用。存在一个最佳浓度,在该浓度下从病毒中喷射出最小量的DNA。在较低或较高的浓度下,衣壳中会弹出更多的DNA。我们认为这种现象是Mg〜2多价抗衡离子使DNA过度充电的结果。随着Mg〜2浓度从零增加,DNA的净电荷从负变为正。最佳抑制作用对应于DNA为中性的Mg〜2浓度。在较低/较高浓度下,DNA基因组带电。它倾向于处于溶液中以降低其静电自能量,从而导致DNA喷射增加。通过使我们的理论适合现有的实验数据,发现由Mg〜2介导的DNA-DNA短程吸引能的强度为-0.004 kBT /核苷酸碱基。该参数和其他拟合参数与其他实验和计算机模拟的已知值非常吻合。这些参数在质量上也与三价和四价抗衡离子的值一致。

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