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Fast-growth thermodynamic integration: Error and efficiency analysis

机译:快速增长的热力学整合:误差和效率分析

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Equilibrium free energy differences can be calculated accurately from repeated fast-growth thermodynamic integration (TI) based on Jarzynski’s identity [Phys. Rev. Lett. 78, 2690 (1997)]. We derive expressions for the free energy differences. Error estimates allow us to quantify the relative efficiency of performing many fast-growth vs few slow-growth TIs for a given total computational cost. Fast-growth TI is illustrated through the calculation of the potential of mean force between two methane molecules and compared to umbrella sampling analyzed by using the weighted histogram analysis method. Fast-growth TI is well suited for parallel computer architectures, requiring only the simplest parallelism with repeated runs for different starting conditions.
机译:平衡自由能差可以根据Jarzynski的身份[重复出现的快速增长的热力学积分(TI)]准确计算得出。牧师78,2690(1997)]。我们推导出自由能差的表达式。误差估计使我们能够量化在给定的总计算成本下执行许多快速增长的TI与很少的缓慢增长的TI的相对效率。快速增长的TI通过计算两个甲烷分子之间的平均力的潜力进行了说明,并与使用加权直方图分析方法进行的伞形抽样进行了比较。快速增长的TI非常适合于并行计算机体系结构,仅要求最简单的并行性并针对不同的起始条件重复运行。

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