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Four-state quantum chain as a model of sequence evolution

机译:四态量子链作为序列演化的模型

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A variety of selection-mutation models for DNA (or RNA) sequences, well known in molecular evolution, can be translated into a model of coupled Ising quantum chains, This correspondence is used to investigate the genetic variability and error threshold behaviour in dependence of possible fitness landscapes. In contrast to the two-state models treated hitherto, the model explicitly takes the four-state nature of the nucleotide alphabet into account and allows for the distinction of mutation rates for the different base substitutions, as given by standard mutation schemes of molecular phylogeny. As a consequence of this refined treatment, new phase diagrams for the error threshold behaviour ale obtained, with appearance of a novel phase in which the nucleotide ordering of the wildtype sequence is only partially conserved. Explicit analytic;ll and numerical results are presented For evolution dynamics and equilibrium behaviour in a number of accessible situations, such as quadratic fitness landscapes and the Kimura 2 parameter mutation scheme. [References: 27]
机译:可以将分子进化中众所周知的各种DNA(或RNA)序列选择突变模型转化为耦合的Ising量子链模型,该对应关系用于研究遗传变异性和错误阈值行为(取决于可能的情况)健身风景。与迄今所处理的两种状态模型相比,该模型明确考虑了核苷酸字母的四状态性质,并允许区分不同碱基取代的突变率,这是由分子系统发育的标准突变方案给出的。作为这种改进处理的结果,获得了错误阈值行为的新相图,并且出现了新相,其中野生型序列的核苷酸排序仅部分保守。给出了显式分析和数值结果,用于许多可访问情况下的演化动力学和平衡行为,例如二次适应度景观和Kimura 2参数突变方案。 [参考:27]

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