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首页> 外文期刊>Journal of chemical theory and computation: JCTC >Revisiting the Exact Relation between Potential of Mean Force and Free-Energy Profile
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Revisiting the Exact Relation between Potential of Mean Force and Free-Energy Profile

机译:再探平均力势与自由能曲线之间的精确关系

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Constraints are convenient in the calculation of free energy profiles via molecular dynamics simulations, but they subtly alter the phase space distribution. In a recent letter of a related title in this journal, Wong and York [J. Chem. Theory Cotnput. 2012, 8, 3998-4003] suggest replacing Fixman's mass-metric correction with its inverse and adding a Jacobian contribution to the potential of mean constraint force. This letter refutes both suggestions, discusses the underlying interpretation problems, and provides supporting numerical simulations.
机译:约束在通过分子动力学模拟计算自由能曲线时很方便,但它们会微妙地改变相空间分布。 Wong和York [J.化学理论值。 2012,8,3998-4003]建议用其反函数代替Fixman的质量校正,并对平均约束力的潜力增加Jacobian贡献。这封信驳斥了这两个建议,讨论了潜在的解释问题,并提供了支持性的数值模拟。

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