Disaccharide conformational maps:3D contours or 2D plots?

摘要

The potential energy surfaces of several alpha-(1->3)-and beta-(1->4)-linked disaccharides were obtained and plotted in terms of energy versus psi glycosidic angle.These plots were compared to those obtained previously in the way of the usual 3D contour maps,which ralate the energy with the two glycosidic angles (phi and psi).Given the usually smallvariations of the phi angle in the low-energy regions (at least using MM3),both kinds of graphs lead to siimilar conclusions concerning flexibility measurements by two different methods and assessment of the effects of sulfation and/or hydroxyl group orientation.Only second-order effects were found with some sulfated disaccharides,not changing the general conclusions.The computational efforts required to produce those plots are smaller,and the plots are easier to interpret.Besides,the conversion of a 3D map into a 3D plot leaves the possibility of constructing 3D maps of carbohydrates including a second variable different to PHI,e.g.,the second psi angle of a trisaccharide or the omega angle of a 6-linked disaccharide.