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Current Protocols in Bioinformatics

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中文名称：当前生物信息学技术

ISSN：1934-3396
出版周期：Quarterly

发文量：17

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1.UNIT 1.7 Searching the Mouse Genome Informatics (MGI) Resources for Information on Mouse Biology from Genotype to Phenotype

机译：单位1.7搜索鼠标基因组信息学（MGI）资源以获取有关从基因型到表型的小鼠生物学信息
- 作者：David R. Shaw
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第56期
- mouse;
- genome;
- genes;
- phenotypes;
- expression;
- alleles;
- function;
2.UNIT 14.13 MetaboLights: An Open-Access Database Repository for Metabolomics Data

机译：UNIT 14.13 MetaboLights：代谢组学数据的开放访问数据库存储库
- 作者：Namrata S. Kale;Kenneth Haug;Pablo Conesa;Kalaivani Jayseelan;Pablo Moreno;Philippe Rocca-Serra;Venkata Chandrasekhar Nainala;Rachel A. Spicer;Mark Williams;Xuefei Li
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第53期
- metabolomics;
- open-access;
- cross-species;
- cross-platform;
- raw data;
- metadata;
- metabolites;
3.UNIT 14.1 Introduction to Cheminformatics

机译：UNIT 14.1化学信息学概论
- 作者：David S. Wishart
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第53期
- cheminformatics;
- bioinformatics;
- metabolomics;
- drug;
- chemical;
4.DIANA-TarBase and DIANA suite tools: studying experimentally supported microRNA targets

机译：DIANA-TarBase和DIANA套件工具：研究实验支持的microRNA靶标
- 作者：Paraskevopoulou M.D.;Vlachos I.S;Hatzigeorgiou A.G
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第55期
- MicroRNA;
- target;
- interaction;
- experimental methodology;
- high-throughput;
- pathway;
- in silico predictions;
- RNAi;
- miRNA interactome;
5.UNIT 13.28 Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics

机译：UNIT 13.28使用PSEA-Quant对基于质谱的定量蛋白质组学进行蛋白质组富集分析
- 作者：Mathieu Lavallée-Adam;John R. Yates III
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第53期
- gene set enrichment analysis;
- gene ontology;
- quantitative proteomics;
- functional enrichment analysis;
- mass spectrometry;
6.Obtaining miRNA-target interaction information from miRWalk2.0

机译：从miRWalk2.0获取miRNA-靶标相互作用信息
- 作者：Alisha Parveen;Norbert Gretz;Harsh Dweep
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第55期
- micro RNA;
- miRNA;
- database;
- miRWalk2.0;
- target predictions;
- pathways;
- gene ontologies;
7.UNIT 1.29 UniProt Tools

机译：UNIT 1.29 UniProt工具
- 作者：Sangya Pundir;Maria J. Martin;Claire ODonovan;The UniProt Consortium
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第53期
- UniProt;
- search;
- navigation;
- tutorial;
8.UNIT 1.31 Exploring FlyBase Data Using QuickSearch

机译：UNIT 1.31使用QuickSearch探索FlyBase数据
- 作者：Steven J. Marygold;Giulia Antonazzo;Helen Attrill;Marta Costa;Madeline A. Crosby;Gilberto dos Santos;Joshua L. Goodman;L. Sian Gramates;Beverley B. Matthews;Alix J. Rey
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第56期
- FlyBase;
- Drosophila melanogaster;
- biological database;
- query tools;
- Quick Search;
9.UNIT 15.16 Measurement of Autophagic Activity in Mammalian Cells

机译：UNIT 15.16测量哺乳动物细胞中的自噬活性
- 作者：Fiona M. Menzies;Kevin Moreau;Claudia Puri;Maurizio Renna;David C. Rubinsztein
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第54期
- autophagy;
- LC3;
- microscopy;
- electron microscopy;
- Huntington's disease;
10.Using the tools and resources of the rcsb protein data bank

机译：使用rcsb蛋白数据库的工具和资源
- 作者：Di Costanzo L;Ghosh S.;Zardecki C;Burley S.K
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第55期
- search;
- macromolecule;
- ligand;
- 3D structure;
- drug discovery;
- single nucleotide variation;
11.UNIT 15.17 Analysis of Polarized Membrane Traffic in Hepatocytes and Hepatic Cell Lines

机译：UNIT 15.17分析肝细胞和肝细胞系中的极化膜运输
- 作者：Julie G. In;Gudrun Ihrke;Pamela L. Tuma
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第54期
- hepatocytes;
- apical;
- basolateral;
- transcytosis;
- membrane;
- traffic;
12.UNIT 15.9 ascatNgs: Identifying Somatically Acquired Copy-Number Alterations from Whole-Genome Sequencing Data

机译：UNIT 15.9 ascatNgs：从全基因组测序数据中识别体获得的拷贝数变化
- 作者：Keiran M. Raine;Peter Van Loo;David C. Wedge;David Jones;Andrew Menzies;Adam P. Butler;Jon W. Teague;Patrick Tarpey;Serena Nik-Zainal;Peter J. Campbell
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第56期
- somatic;
- sequencing;
- cancer;
- copy-number;
13.UNIT 27.3 Analysis of Nonsense-Mediated mRNA Decay in Saccharomyces cerevisiae

机译：UNIT 27.3酿酒酵母中无意义介导的mRNA衰变分析
- 作者：Bessie W. Kebaara;Kristian E. Baker;Krista D. Patefield;Audrey L. Atkin
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第54期
- steady-state mRNA level;
- mRNA decay rate;
- untranslated region length;
- 5′-cap;
- poly(A) tail length;
- nonsense suppression;
- allosuppression;
14.UNIT 13.30 The Search Engine for Multi-Proteoform Complexes: An Online Tool for the Identification and Stoichiometry Determination of Protein Complexes

机译：UNIT 13.30多蛋白形式复合物的搜索引擎：用于鉴定和化学计量确定蛋白复合物的在线工具
- 作者：Owen S. Skinner;Luis F. Schachner;Neil L. Kelleher
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第56期
- protein complexes;
- multi-proteoform complexes;
- top-down proteomics;
- native mass spectrometry;
15.UNIT 3.9 Finding Protein and Nucleotide Similarities with FASTA

机译：UNIT 3.9查找与FASTA的蛋白质和核苷酸相似性
- 作者：William R. Pearson
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第53期
- similarity;
- homology;
- expectation;
- EO-value;
- alignment annotation;
- scoring matrices;
16.Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis

机译：使用MetaboAnalyst 3.0进行全面的代谢组学数据分析
- 作者：Jianguo Xia;David S. Wishart
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第55期
17.UNIT 15.10 cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data

机译：UNIT 15.10 cgpCaVEManWrapper：CaVEMan的简单执行，以便检测NGS数据中的体细胞单核苷酸变异
- 作者：David Jones;Keiran M. Raine;Helen Davies;Patrick S. Tarpey;Adam P. Butler;Jon W. Teague;Serena Nik-Zainal;Peter J. Campbell
- 期刊名称：《Current Protocols in Bioinformatics》 | 2016年第56期
- somatic;
- cancer;
- sequencing;
- SNV;
- substitution;
18.R Tutorial: Detection of Differentially Interacting Chromatin Regions From Multiple Hi-C Datasets

机译：R教程：检测多个Hi-C数据集的差异相互作用的染色质区
- 作者：John C. Stansfield;Due Tran;Tin Nguyen
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- chromosome conformation capture;
- comparison;
- differential analysis;
- Hi-C;
- HiCcompare;
- multiHiCcompare;
- normalization;
19.Using ggtree to Visualize Data on Tree‐Like Structures

机译：使用ggtree可视化树状结构上的数据
- 作者：Guangchuang Yu
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
20.Identification of Key Residues in ProteinsThrough Centrality Analysis andFlexibility Prediction with RINspector

机译：鉴定蛋白质蛋白质中心分析中的关键残留物和RINSPector的粘合预测
- 作者：Guillaume Brysbaert;Theo Mauri;Jerome de Ruyck;Marc F. Lensink
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- centrality analysis;
- flexibility prediction;
- protein structure;
- residue interaction network;
21.MetaBridge: An Integrative Multi‐Omics Tool for Metabolite‐Enzyme Mapping

机译：Metabridge：用于代谢物酶映射的一体化多OMICS工具
- 作者：Travis Blimkie;Amy Huei-Yi Lee;Robert E.W. Hancock
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
22.The MathIOmica Toolbox: General Analysis Utilities for Dynamic Omics Datasets

机译：Mathiomica工具箱：动态OMIC数据集的一般分析实用程序
- 作者：George I. Mias;Minzhang Zheng
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
23.How to Illuminate the Druggable Genome Using Pharos

机译：如何使用法罗斯照亮可药剂基因组
- 作者：Timothy Sheils;Stephen L. Mathias;Vishal B. Siramshetty
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
24.QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

机译：奇摩2可以通过公开数据进行多种微生物组数据和比较研究的全面结束分析
- 作者：Mehrbod Estaki;Lingjing Jiang;Nicholas A. Bokulich
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
25.Exploring Non-Coding RNAs in RNAcentral

机译：探索潮流rnas中的非编码rnas
- 作者：Blake A. Sweeney;Arina A. Tagmazian;Carlos E. Ribas
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
- Galaxy;
- ncRNA;
- non-coding RNA;
- RNAcentral;
- RNA-seq;
26.Mothulity Facilitates 16S/ITS Amplicon Diversity Analysis

机译：Mothility有助于16S /其扩增子分集分析
- 作者：D. Izak;A. Gromadka;S. Kaczanowski
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
27.Network Building with the Cytoscape BioGateway App Explained in Five Use Cases

机译：网络建筑用Cytoscape Biogateway应用程序在五种用例中解释
- 作者：Rafael Riudavets Puig;Stian Holmas;Vladimir Mironov
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
- Cytoscape App;
- exploratory network building;
- RDF triple store;
- SPARQL queries;
- transcription factor regulation resource;
28.Using EMBL-EBI Services via Web Interface and Programmatically via Web Services

机译：通过Web界面使用EMBL-EBI服务和通过Web服务以编程方式使用
- 作者：Fabio Madeira;Nandana Madhusoodanan;Joon Lee
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- bioinformatics tools;
- bioinformatics resources;
- programmatic access;
- REST;
- SOAP;
- web services;
- workflows;
29.Using the sORFs.Org Database

机译：使用sorfs.org数据库
- 作者：Volodimir Olexiouk;Gerben Menschaert
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- micropeptide;
- ribosome profiling;
- SEP;
- small open reading;
- frame;
- sORF;
30.Using MARRVEL vl.2 for Bioinformatics Analysis of Human Genes and Variant Pathogenicity

机译：使用Marribel VL.2进行生物信息学分析人类基因和变异致病性
- 作者：Julia Wang;Dongxue Mao;Fatima Fazal
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- genes of unknown significance;
- genetics;
- genomics databases;
- model organisms;
- variants of unknown significance;
31.Constructing and Analyzing Computational Models of Cell Signaling with BioModelAnalyzer

机译：用生物汇聚仪构建和分析细胞信号的计算模型
- 作者：Benjamin A. Hall;Jasmin Fisher
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
32.NCBI's Conserved Domain Database and Tools for Protein Domain Analysis

机译：NCBI的保守域数据库和蛋白质领域分析的工具
- 作者：Mingzhang Yang;Myra K. Derbyshire;Roxanne A. Yamashita
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
33.Discovering Transcriptional Regulatory Elements From Run-On and Sequencing Data Using the Web-Based dREG Gateway

机译：使用基于Web的DREG网关从运行和测序数据发现转录调节元件
- 作者：Tinyi Chu;Zhong Wang;Shao-Pei Chou
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- ChRO-seq;
- enhancers;
- gene regulation;
- GRO-seq;
- PRO-seq;
34.Good Citizenship Made Easy: AStep-by-Step Guide to SubmittingRNA-Seq Data to NCBI

机译：良好的公民身份简单：将ASTEPTEPTRNA-SEQ数据指南逐步指南到NCBI
- 作者：Wiebke Feindt;Sara J. Oppenheim;Robert DeSalle;Shaadi Mehr
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- ioinformatics;
- NCBI databases;
- NGS-data submission;
- RNAseq;
- sequence read archive (SRA);
- transcriptome shotgun assembly (TSA);
35.Using the MINT Database to Search Protein Interactions

机译：使用薄荷数据库搜索蛋白质交互
- 作者：Alberto Calderone;Marta Iannuccelli;Daniele Peluso
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
36.Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis

机译：使用MetaboAnalyst 4.0进行全面和整合的代谢组数据分析
- 作者：Jasmine Chong;David S. Wishart;Jianguo Xia
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
37.Visualizing Human Protein‐Protein Interactions and Subcellular Localizations on Cell Images Through CellMap

机译：通过Cellmap可视化人蛋白质 - 蛋白质 - 蛋白质相互作用和细胞图像的亚细胞局部
- 作者：Christian Dallago;Tatyana Goldberg;Miguel Angel Andrade‐Navarro
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
38.Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt

机译：用DISPROT探索本症蛋白质的手动策划注释
- 作者：Federica Quaglia;András Hatos;Damiano Piovesan
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
39.Analyzing Protein Disorder with IUPred2A

机译：用IUPRED2A分析蛋白质障碍
- 作者：Gábor Erds;Zsuzsanna Dosztányi
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
40.Predicting Genes in Single Genomes withAUGUSTUS

机译：预测单一基因组的基因与ugustus
- 作者：Katharina J. Hoff;Mario Stanke
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- AUGUSTUS evidence integration;
- gene prediction;
- gen;
- omeannotation;
- RNA-Seq;
41.How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource

机译：如何使用多OMIC OpenProT资源来照亮黑暗蛋白质组
- 作者：Marie A. Brunet;Amina M. Lekehal;Xavier Roucou
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
- alternative ORF;
- alt-ORF;
- OpenProt;
- small ORF;
- sORF;
42.Investigation of RNA-RNA InteractionsUsing the RISE Database

机译：RNA-RNA对崛起数据库的关系调查
- 作者：Yanyan Ju;Jing Gong;Yucheng T. Yang;Qiangfeng Cliff Zhang
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- interaction;
- RISE;
- RNA;
- RNA-RNA;
- RNA structure;
- sequencingexperiments;
43.Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing

机译：用于RNA-SEQ实验的数据分析管道：从差异表达到密码拼接
- 作者：Hari Krishna Yalamanchili;Ying-Wooi Wan;Zhandong Liu
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- RNA-seq;
- differential gene expression;
- differential isoform usage;
- alternative splicing;
- cryptic splicing;
44.Finding Homologs in Amino Acid Sequences Using Network BLAST Searches

机译：使用网络爆炸搜索在氨基酸序列中寻找同源物
- 作者：Istvan Ladunga
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- BLAST;
- Basic Local Alignment Search Tool;
- Sequence similarity search;
- Protein function prediction;
- Homology;
- translated BLAST searches;
45.Using ProteomeScout: A Resource of Post-Translational Modifications, Their Experiments, and the Proteins That They Annotate

机译：使用proteomescout：翻译后修饰的资源，他们的实验和它们注释的蛋白质
- 作者：Arshag D. Mooradian;Jason M. Held;Kristen M. Naegle
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- compendia;
- dataset analysis;
- post-translational modifications;
- protein annotations;
- protein visualization;
46.UNIT 13.32 Using ProteomeScout: A Resource of Post-Translational Modifications, Their Experiments, and the Proteins That They Annotate

机译：单元13.32使用Proteomesceut：翻译后修饰的资源，他们的实验和它们注释的蛋白质
- 作者：Arshag D. Mooradian;Jason M. Held;Kristen M. Naegle
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- compendia;
- dataset analysis;
- post-translational modifications;
- protein annotations;
- protein visualization;
47.UNIT 11.15 Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing

机译：单元11.15 RNA-SEQ实验数据分析管道：从差异表达到密码拼接
- 作者：Hari Krishna Yalamanchili;Ying-Wooi Wan;Zhandong Liu
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- RNA-seq;
- differential gene expression;
- differential isoform usage;
- alternative splicing;
- cryptic splicing;
48.UNIT 8.24 Using the Contextual Hub Analysis Tool (CHAT) in Cytoscape to Identify Contextually Relevant Network Hubs

机译：单元8.24使用cytoscape中的上下文集线器分析工具（聊天）来识别上下文相关网络集线器
- 作者：Tanja Muetze;David J. Lynn
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- CHAT;
- contextual hub analysis;
- gene expression;
- network analysis;
- Cytoscape 3;
49.UNIT 9.4 Using SQL Databases for Sequence Similarity Searching and Analysis

机译：单元9.4使用SQL数据库进行序列相似性搜索和分析
- 作者：William R. Pearson;Aaron J. Mackey
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- relational database;
- sequence similarity;
- comparative genomic analysis;
- homology;
50.Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets

机译：使用Pride数据库和Proteomexchange来提交和访问公共蛋白质组学数据集
- 作者：Andrew F. Jarnuczak;Juan Antonio Vizcaino
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- PRIDE database;
- proteomics;
- data repository;
- mass spectrom-etry;
51.Using SQL Databases for Sequence Similarity Searching and Analysis

机译：使用SQL数据库进行序列相似性搜索和分析
- 作者：William R. Pearson;Aaron J. Mackey
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- relational database;
- sequence similarity;
- comparative genomic analysis;
- homology;
52.Using the Contextual Hub Analysis Tool (CHAT) in Cytoscape to Identify Contextually Relevant Network Hubs

机译：使用Cytoscape中的上下文集线器分析工具（聊天）以识别上下文相关网络集线器
- 作者：Tanja Muetze;David J. Lynn
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- CHAT;
- contextual hub analysis;
- gene expression;
- network analysis;
- Cytoscape 3;
53.UNIT 13.31 Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets

机译：单元13.31使用vide数据库和proteomexchange来提交和访问公共蛋白质组学数据集
- 作者：Andrew F. Jarnuczak;Juan Antonio Vizcaíno
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- PRIDE database;
- proteomics;
- data repository;
- mass spectrometry;
54.UNIT 3.4 Finding Homologs in Amino Acid Sequences Using Network BLAST Searches

机译：单元3.4使用网络爆炸搜索在氨基酸序列中寻找同源物
- 作者：Istvan Ladunga
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- BLAST;
- Basic Local Alignment Search Tool;
- Sequence similarity search;
- Protein function prediction;
- Homology;
- translated BLAST searches;
55.The GWIPS-viz Browser

机译：Gwips-viz浏览器
- 作者：Stephen J. Kiniry;Audrey M. Michel;Pavel V. Baranov
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- genome browser;
- gene expression;
- GWIPS-viz;
- mRNA-seq;
- protein synthesis;
- ribosome profiling;
- translation;
56.SPIN: Submitting Sequences Determinedat Protein Level to UniProt

机译：旋转：将序列确定为Uniprot的蛋白质水平
- 作者：Klemens Pichler;Kate Warner;Michele Magrane;The UniProtConsortium
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- direct protein sequencing;
- submission;
- UniProt;
57.Using LICHeE and BAMSE forReconstructing Cancer Phylogenetic Trees

机译：使用Lichee和BAMSE Forconstricting癌症系统发育树
- 作者：Camir Ricketts;Victoria Popic;Hosein Toosi;Iman Hajirasouliha
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- cancer phylogeny;
- deep sequencing;
- next-generation sequencing;
- tumor heterogeneity;
- somatic variations;
58.Lsing LICHeE and BAMSE forReconstructing Cancer Phylogenetic Trees

机译：失去荔枝和BAMSE重建癌症系统发育树
- 作者：Camir Ricketts;Victoria Popic;Hosein Toosi;Iman Hajirasouliha
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- ancer phylogeny;
- deep sequencing;
- next-generation sequencing;
- tumor heterogeneity;
- somatic variations;
59.SPIN: Submitting Sequences Determinedat Protein Level to UniProt

机译：旋转：将序列确定为Uniprot的蛋白质水平
- 作者：Klemens Pichler;Kate Warner;Michele Magrane;The UniProtConsortium
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- direct protein sequencing;
- submission;
- UniProt;
60.The GWIPS-viz Browser

机译：Gwips-viz浏览器
- 作者：Stephen J. Kiniry;Audrey M. Michel;Pavel V. Baranov
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- genome browser;
- gene expression;
- GWIPS-viz;
- mRNA-seq;
- protein synthesis;
- ribosome profiling;
- translation;
61.Non-Coding RNA Analysis Using theRfam Database

机译：非编码RNA分析使用Therfam数据库
- 作者：Ioanna Kalvari;Eric P. Nawrocki;Joanna Argasinska;Natalia Quinones-Olvera;Robert D. Finn;Alex Bateman;and Anton I. Petrov
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- genome annotation;
- non-coding RNA;
- Rfam;
- RNA family;
- Infernal;
62.Installing, Maintaining, and Using a LocalCopy of BLAST for Compute Cluster orWorkstation Use

机译：安装，维护和使用Blast的LocalCopy for Compute Cluster OrworkStation使用
- 作者：Istvan Ladunga
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- biosequence analysis;
- BLAST LINUX;
- sequence similaritysearch;
63.Improved RNA-seq Workflows UsingCyVerse Cyberinfrastructure

机译：使用环胞瘤Frastruction改进的RNA-SEQ工作流程
- 作者：Kapeel M. Chougule;Liya Wang;Joshua C. Stein;Xiaofei Wang;Upendra Kumar Devisetty;Robert R. Klein;Doreen Ware
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
64.Analysis and Visualization of DynamicNetworks Using the DyNet App forCytoscape

机译：使用Dynet App forcytoscape的DyneNetWorks的分析与可视化
- 作者：John Salamon;Ivan H. Goenawan;David J. Lynn
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- Cytoscape 3;
- dynamic network;
- DyNet;
- network analysis;
65.Predicting Sequence Features, Function, and Structure of Proteins Using MESSA

机译：预测使用Messa的序列特征，功能和结构
- 作者：Archana S. Bhat;NickV.Grishin
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- MESSA;
- predictions;
- protein sequence;
- structure and function;
66.Ploidy- and Purity-Adjusted Allele-Specific DNA Analysis Using CLONETv2

机译：使用CLONETV2的倍增性和纯度调整的等位基因特异性DNA分析
- 作者：Davide Prandi;Francesca Demichelis
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- allele-specific analysis;
- cancer genomics;
- clonality;
- ploidy;
- purity;
67.Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook

机译：LNCRNAWIKI和LNCBook的人类长期非数rnas的社区策划与专家策策
- 作者：LinaMa;Jiabao Cao;Lin Liu
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- community curation;
- disease;
- expert curation;
- long noncoding RNA;
- multi-omics data;
68.Integrating Bacterial ChlP-seq and RNA-seq Data With SnakeChunks

机译：用Snakechks集成细菌CHLP-SEQ和RNA-SEQ数据
- 作者：Claire Rioualen;Lucie Charbonnier-Khamvongsa;Julio Collado-Vides
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- ChlP-seq;
- Escherichia coli K-12;
- FAIR Guiding Principles;
- reproducible science;
- RNA-seq;
- workflow;
69.Using PconsC4 and PconsFold2 to Predict Protein Structure

机译：使用PCONSC4和PCONSFOLD2预测蛋白质结构
- 作者：Claudio Bassot;David Menendez Hurtado;Arne Elofsson
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- contact prediction;
- PconsC4;
- PconsFold2;
- protein structure prediction;
- template-free modeling;
70.Population Genetic Inference With MIGRATE

机译：迁移群体遗传推论
- 作者：Peter Beerli;Somayeh Mashayekhi;Marjan Sadeghi
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- Bayesian inference;
- coalescent;
- divergence time;
- DNA;
- gene flow;
- MCMC;
- microsatellite;
- population genetics;
71.Using Mothur to Determine Bacterial Community Composition and Structure in 16S Ribosomal RNA Datasets

机译：使用Mothur来确定16S核糖体RNA数据集中的细菌群落组成和结构
- 作者：Sruthi Chappidi;Erika C. Villa;Brandi L. Cantarel
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- 16S rRNA;
- microbiome;
- OTUs;
72.Visualizing Post-Translational Modifications in Protein Interaction Networks Using PTMOracle

机译：使用PTMORACLE可视化蛋白质交互网络的翻译后修改
- 作者：Aidan P. Tay;Angelita Liang;Marc R. Wilkins
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- Cytoscape;
- data integration;
- network visualization;
- post-translational modification;
- protein-protein interaction;
73.Utilizing iVariantGuide for VariantAssessment of Next-GenerationSequencing

机译：利用Ivariant指南进行下一代测序的变体评估
- 作者：Sophia R. Chaudhry;Michael A. Tainsky
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- clinical risk analysis;
- novel single nucleotide variants;
- variantassessment;
74.Using OmicsNet for Network Integrationand 3D Visualization

机译：使用OMICSNET用于网络集成和3D可视化
- 作者：Guangyan Zhou;Jianguo Xia
- 期刊名称：《Current Protocols in Bioinformatics》 | 2019年第1期
- 3D network visualization;
- metabolic network;
- miRNA-gene;
- interactions;
- multi-omics integration;
- network analysis;
- PPI;
- TF-gene;
- interactions;
- web application;
75.Using geneid to Identify Genes

机译：使用基因鉴定基因
- 作者：Tyler Alioto;Enrique Blanco;Gen′s Parra;Roderic Guigo
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- bioinformatics;
- exons;
- gene identification;
- genes;
- genome;
- annotation splicing;
76.Expanding the Perseus Software for Omics Data Analysis With Custom Plugins

机译：使用自定义插件扩展珀斯数据分析的Perseus软件
- 作者：Sung-Huan Yu;Daniela Ferretti;Julia P. Schessner
- 期刊名称：《Current Protocols in Bioinformatics》 | 2020年第1期
- MaxQuant;
- omics data analysis;
- Perseus;
- plugin development;
- quantitative proteomics;
77.Pre-Processing MALDI/TOF MassSpectra by Using Geena

机译：使用Geena预处理MALDI / TOF MassSpectra
- 作者：P. Romano;A. Profumo;A. Facchiano
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- mass spectrometry;
- pre-processing;
- spectra alignment;
- MALDI/TOF;
78.UNIT 8.22 Exploring Short Linear Motifs Using the ELM Database and Tools

机译：单元8.22使用ELM数据库和工具探索短线性图案
- 作者：Marc Gouw;Hugo Sámano-Sánchez;Kim Van Roey;Francesca Diella;Toby J. Gibson;Holger Dinkel
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第58期
- short linear motifs;
- bioinformatics;
- protein-protein interaction;
- molecular switches;
- cell regulation;
79.UNIT 13.31 Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets

机译：单元13.31使用vide数据库和proteomexchange来提交和访问公共蛋白质组学数据集
- 作者：Andrew F. Jarnuczak;Juan Antonio Vizcaíno
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- PRIDE database;
- proteomics;
- data repository;
- mass spectrometry;
80.UNIT 11.15 Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing

机译：单元11.15 RNA-SEQ实验数据分析管道：从差异表达到密码拼接
- 作者：Hari Krishna Yalamanchili;Ying-Wooi Wan;Zhandong Liu
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- RNA-seq;
- differential gene expression;
- differential isoform usage;
- alternative splicing;
- cryptic splicing;
81.Using ProteomeScout: A Resource of Post-Translational Modifications, Their Experiments, and the Proteins That They Annotate

机译：使用proteomescout：翻译后修饰的资源，他们的实验和它们注释的蛋白质
- 作者：Arshag D. Mooradian;Jason M. Held;Kristen M. Naegle
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- compendia;
- dataset analysis;
- post-translational modifications;
- protein annotations;
- protein visualization;
82.Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets

机译：使用Pride数据库和Proteomexchange来提交和访问公共蛋白质组学数据集
- 作者：Andrew F. Jarnuczak;Juan Antonio Vizcaino
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- PRIDE database;
- proteomics;
- data repository;
- mass spectrom-etry;
83.Non-Coding RNA Analysis Using theRfam Database

机译：非编码RNA分析使用Therfam数据库
- 作者：Ioanna Kalvari;Eric P. Nawrocki;Joanna Argasinska;Natalia Quinones-Olvera;Robert D. Finn;Alex Bateman;and Anton I. Petrov
- 期刊名称：《Current Protocols in Bioinformatics》 | 2018年第1期
- genome annotation;
- non-coding RNA;
- Rfam;
- RNA family;
- Infernal;
84.UNIT 9.4 Using SQL Databases for Sequence Similarity Searching and Analysis

机译：单元9.4使用SQL数据库进行序列相似性搜索和分析
- 作者：William R. Pearson;Aaron J. Mackey
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第59期
- relational database;
- sequence similarity;
- comparative genomic analysis;
- homology;
85.Phylogenetic Inference Using Rev Bayes

机译：Phylogenetic Inference Using Rev Bayes
- 作者：Sebastian Hohna;Michael J. Landis;Tracy A. Heath
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第57期
86.Using 3dRNA for RNA 3-D Structure Prediction and Evaluation

机译：使用 3dRNA 进行 RNA 3-D 结构预测和评估
- 作者：Jian Wang;Yi Xiao
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第57期
- 3dRNA;
- 3dRNAscore;
- RNA;
- 3-D structure prediction;
- 3-D structure evaluation;
87.Using FunSeq for Coding and Non-Coding Variant Annotation and Prioritization

机译：Using FunSeq for Coding and Non-Coding Variant Annotation and Prioritization
- 作者：Priyanka Dhingra;Yao Fu;Mark GersteinEkta Khurana
- 期刊名称：《Current Protocols in Bioinformatics》 | 2017年第57期
- disease-causing;
- differential gene expression;
- cancer drivers;
- indels;
- non-coding variants;
- single nucleotide variants;

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