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Dynamics of Xenon Binding Inside the Hydrophobic Cavity of Pseudo-Wild-type Bacteriophage T4 Lysozyme Explored through Xenon-Based NMR Spectroscopy

机译:基于氙的NMR谱图研究伪野生型噬菌体T4溶菌酶的疏水腔内氙结合的动力学。

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摘要

Wild-type bacteriophage T4 lysozyme contains a hydrophobic cavity with binding properties that have been extensively studied by X-ray crystallography and NMR.In the present study,the monitoring of ~1H chemical shift variations under xenon pressure enables the determination of the noble gas binding constant (K= 60.2 M~(-1)).Although the interaction site is highly localized,dipolar cross-relaxation effects between laser-polarized xenon and nearby protons (SPINOE) are rather poor.This is explained by the high value of the xenon-proton dipolar correlation time (0.8 ns),much longer than the previously reported values for xenon in medium-size proteins.This indicates that xenon is highly localized within the protein cavity,as confirmed by the large chemical shift difference between free and bound xenon.The exploitation of the xenon line width variation vs xenon pressure and protein concentration allows the extraction of the exchange correlation time between free and bound xenon.Comparison to the exchange experienced by protein protons indicates that the exchange between the open and closed conformations of T4 lysozyme is not required for xenon binding.
机译:野生型噬菌体T4溶菌酶含有一个疏水腔,该腔具有结合特性,已通过X射线晶体学和NMR进行了广泛研究。在本研究中,监测氙压力下〜1H化学位移的变化可以确定稀有气体结合常数(K = 60.2 M〜(-1))。尽管相互作用位点高度局部化,但激光极化的氙气与附近质子(SPINOE)之间的偶极交叉弛豫效果却很差。氙-质子的偶极相关时间(0.8 ns),比以前报道的中等大小蛋白质中的氙值长得多。这表明氙在蛋白质腔内高度定位,这被游离和结合之间的巨大化学位移差异所证实利用氙线宽变化与氙压力和蛋白质浓度的关系,可以提取游离和结合氙之间的交换相关时间。蛋白质质子经历的交换表明氙结合不需要T4溶菌酶的开放和闭合构象之间的交换。

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  • 来源
    《Journal of the American Chemical Society》 |2005年第33期|p.11676-11683|共8页
  • 作者单位

    Contribution from the Laboratoire Structure et Dynamique par Resonance Magnetique,DSM/ DRECAM/Service de Chimie Moleculaire,URA CEA/CNRS 331,C.E.A.Saclay,F-91191 Gif sur Yvette,France,and Institute of Molecular Biology,Howard Hughes Medical Institute;

    Contribution from the Laboratoire Structure et Dynamique par Resonance Magnetique,DSM/ DRECAM/Service de Chimie Moleculaire,URA CEA/CNRS 331,C.E.A.Saclay,F-91191 Gif sur Yvette,France,and Institute of Molecular Biology,Howard Hughes Medical Institute;

    Contribution from the Laboratoire Structure et Dynamique par Resonance Magnetique,DSM/ DRECAM/Service de Chimie Moleculaire,URA CEA/CNRS 331,C.E.A.Saclay,F-91191 Gif sur Yvette,France,and Institute of Molecular Biology,Howard Hughes Medical Institute;

    Contribution from the Laboratoire Structure et Dynamique par Resonance Magnetique,DSM/ DRECAM/Service de Chimie Moleculaire,URA CEA/CNRS 331,C.E.A.Saclay,F-91191 Gif sur Yvette,France,and Institute of Molecular Biology,Howard Hughes Medical Institute;

    Contribution from the Laboratoire Structure et Dynamique par Resonance Magnetique,DSM/ DRECAM/Service de Chimie Moleculaire,URA CEA/CNRS 331,C.E.A.Saclay,F-91191 Gif sur Yvette,France,and Institute of Molecular Biology,Howard Hughes Medical Institute;

    Contribution from the Laboratoire Structure et Dynamique par Resonance Magnetique,DSM/ DRECAM/Service de Chimie Moleculaire,URA CEA/CNRS 331,C.E.A.Saclay,F-91191 Gif sur Yvette,France,and Institute of Molecular Biology,Howard Hughes Medical Institute;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 化学;
  • 关键词

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