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首页> 外文期刊>Journal of the American Chemical Society >Site-Specific Backbone Amide ~(15)N Chemical Shift Anisotropy Tensors in a Small Protein from Liquid Crystal and Cross-Correlated Relaxation Measurements
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Site-Specific Backbone Amide ~(15)N Chemical Shift Anisotropy Tensors in a Small Protein from Liquid Crystal and Cross-Correlated Relaxation Measurements

机译:液晶中小蛋白质中特定于位点的骨酰胺〜(15)N化学位移各向异性张量和互相关弛豫测量

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摘要

Site-specific ~(15)N chemical shift anisotropy (CSA) tensors have been derived for the well-ordered backbone amide ~(15)N nuclei in the B3 domain of protein G (GB3) from residual chemical shift anisotropy (RCSA) measured in six different mutants that retain the native structure but align differently relative to the static magnetic field when dissolved in a liquid crystalline Pf11 suspension. This information is complemented by measurement of cross-correlated relaxation rates between the ~(15)N CSA tensor and either the ~(15)N-~1H or ~(15)N-~(13)C' dipolar interaction. In agreement with recent solid state NMR measurements, the ~(15)N CSA tensors exhibit only a moderate degree of variation from averaged values, but have larger magnitudes in α-helical (-173 ± 7 ppm) than in β-sheet (-162 ± 6 ppm) residues, a finding also confirmed by quantum computations. The orientations of the least shielded tensor component cluster tightly around an in-peptide-plane vector that makes an angle of 19.6 ± 2.5° with the N-H bond, with the asymmetry of the ~(15)N CSA tensor being slightly smaller in a-helix (η = 0.23 ± 0.17) than in β-sheet (η = 0.31 ± 0.11). The residue-specific ~(15)N CSA values are validated by improved agreement between computed and experimental ~(15)N R_(1p) relaxation rates measured for ~(15)N-{~2H} sites in GB3, which are dominated by the CSA mechanism. Use of residue-specific ~(15)N CSA values also results in more uniform generalized order parameters, S~2, and predicts considerable residue-by-residue variations in the magnetic field strengths where TROSY line narrowing is most effective.
机译:已从测量的残留化学位移各向异性(RCSA)推导了蛋白质G(GB3)B3域中秩序良好的骨架酰胺〜(15)N核的位点特异性〜(15)N化学位移各向异性(CSA)张量。在六种不同的突变体中,它们保留了天然结构,但溶解在液晶Pf11悬浮液中时相对于静磁场排列不同。通过测量〜(15)N CSA张量与〜(15)N-〜1H或〜(15)N-〜(13)C'偶极相互作用之间的互相关弛豫率来补充此信息。与最近的固态NMR测量结果一致,〜(15)N CSA张量与平均值相比仅表现出中等程度的变化,但在α螺旋(-173±7 ppm)中的幅度大于在β-sheet中的(- 162±6 ppm)残留,这一发现也被量子计算所证实。屏蔽程度最小的张量分量的方向紧密围绕肽平面内的向量,该向量与NH键成19.6±2.5°的角,〜(15)N CSA张量的不对称性在a-中略小螺旋形(η= 0.23±0.17)比β-折叠(η= 0.31±0.11)通过对GB3中〜(15)N- {〜2H}位点测得的计算和实验〜(15)N R_(1p)弛豫速率之间的改进一致性来验证残基特异性〜(15)N CSA值通过CSA机制。使用特定于残基的〜(15)N CSA值还会导致更均匀的广义阶数参数S〜2,并预测TROSY线变窄最有效的磁场强度中各个残基的残基差异很大。

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  • 来源
    《Journal of the American Chemical Society》 |2010年第12期|p.4295-4309|共15页
  • 作者单位

    Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0520;

    Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0520;

    rnNational Magnetic Resonance Facility, Madison, Wisconsin 53706;

    rnLaboratory of Chemical Physics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0520;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
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  • 正文语种 eng
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