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Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning

机译:具有快速魔角旋转的蛋白质的快速质子检测NMR分配

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摘要

Using a set of six ~1H-detected triple-resonance NMR experiments, we establish a method for sequence-specific backbone resonance assignment of magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of 5-30 kDa proteins. The approach relies on perdeuteration, amide ~2H/~1H exchange, high magnetic fields, and high-spinning frequencies (ω_r/2π ≥ 60 kHz) and yields high-quality NMR data, enabling the use of automated analysis. The method is validated with five examples of proteins in different condensed states, including two microcrystalline proteins, a sedimented virus capsid, and two membrane-embedded systems. In comparison to contemporary ~(13)C/~(15)N-based methods, this approach facilitates and accelerates the MAS NMR assignment process, shortening the spectral acquisition times and enabling the use of unsupervised state-of-the-art computational data analysis protocols originally developed for solution NMR.
机译:使用一组六个〜1H检测到的三共振NMR实验,我们建立了5-30 kDa蛋白的魔角旋转(MAS)核磁共振(NMR)谱的序列特异性主链共振分配方法。该方法依靠氘化,酰胺〜2H /〜1H交换,高磁场和高旋转频率(ω_r/2π≥60 kHz),并产生高质量的NMR数据,从而可以使用自动化分析。该方法已用五个处于不同浓缩状态的蛋白质实例进行了验证,包括两个微晶蛋白,一个沉淀的病毒衣壳和两个膜包埋系统。与当代基于〜(13)C /〜(15)N的方法相比,此方法有助于并加速MAS NMR分配过程,缩短了光谱采集时间,并允许使用无监督的最新计算数据最初为溶液NMR开发的分析方案。

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  • 来源
    《Journal of the American Chemical Society》 |2014年第35期|12489-12497|共9页
  • 作者单位

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Leibniz-Institut fuer Molekulare Pharmakologie, 13125 Berlin, Germany;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France,Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States;

    Latvian Institute of Organic Synthesis, Riga LV-1006, Latvia;

    Leibniz-Institut fuer Molekulare Pharmakologie, 13125 Berlin, Germany;

    Leibniz-Institut fuer Molekulare Pharmakologie, 13125 Berlin, Germany;

    Leibniz-Institut fuer Molekulare Pharmakologie, 13125 Berlin, Germany;

    Leibniz-Institut fuer Molekulare Pharmakologie, 13125 Berlin, Germany;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Biomedical Research and Study Centre, Riga LV-1067, Latvia;

    Biomedical Research and Study Centre, Riga LV-1067, Latvia;

    Biomedical Research and Study Centre, Riga LV-1067, Latvia;

    Department of Molecular Medicine, University of Pavia, 65 Pavia, Italy;

    Department of Molecular Medicine, University of Pavia, 65 Pavia, Italy,Wolfson Drag Discovery Centre National Amyloidosis Centre, Centre for Amyloidosis and Acute Phase Proteins, University College London (UCL), London WC1E 6BT, U.K.;

    Department of Biosciences, University of Milano, 20126 Milano, Italy;

    Department of Biosciences, University of Milano, 20126 Milano, Italy;

    Harvard Medical School, Boston, Massachusetts 02115, United States;

    Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States;

    Leibniz-Institut fuer Molekulare Pharmakologie, 13125 Berlin, Germany;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

    Centre de RMN a Tres Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Universite de Lyon, 69100 Villeurbanne, France;

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  • 入库时间 2022-08-18 03:11:10

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