首页> 外文期刊>Journal of Bioinformatics and Computational Biology >VirE2-DEPENDENT PORES FOR ssDNA TRANSFER ACROSS ARTIFICIAL AND CELL MEMBRANES
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VirE2-DEPENDENT PORES FOR ssDNA TRANSFER ACROSS ARTIFICIAL AND CELL MEMBRANES

机译:跨人工和细胞膜进行ssDNA转移的VirE2依赖孔

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摘要

The transfer of single-stranded (ss) T-DNA from soil bacteria of the genus Agrobacterium with the help of the VirE2 protein, which possibly mediates the delivery of ss-T-DNA across the cell membrane, was demonstrated earlier, but how VirE2 participates in ssDNA transfer across artificial and natural membranes is not known. Using computational methods, we reconstructed model structures composed of two and four VirE2 proteins and showed by the MOLE program the formation of pores with channel diameters of 1.2–1.6 and 1.4–4.6 nm in a model structure formed from two and four VirE2 molecules, respectively. Using light scattering, we recorded the size distribution for recombinant VirE2-dependent complexes in aqueous solutions and found that VirE2 in a buffer solution is present as a complex made up of two or more proteins. We revealed single, long-lived jumps in voltage-dependent membrane conductance during coincubation of planar black membranes with the VirE2 protein. On the addition of VirE2 and FAM-labeled oligonucleotides to HeLa cells, the fluorescence intensity for the cells increased by 56% as compared to that for cells incubated only with oligonucleotides.
机译:农杆菌属的土壤细菌在VirE2蛋白的帮助下单链(ss)T-DNA的转移可能会介导ss-T-DNA在细胞膜上的传递,但这一点在较早的时候就得到了证实,但是VirE2如何参与跨人工和天然膜的ssDNA转移尚不清楚。使用计算方法,我们重建了由两个和四个VirE2蛋白质组成的模型结构,并通过MOLE程序显示了在分别由两个和四个VirE2分子形成的模型结构中形成通道直径为1.2–1.6和1.4–4.6 nm的孔的形成。使用光散射,我们记录了水溶液中重组VirE2依赖复合物的大小分布,发现缓冲溶液中的VirE2作为由两种或多种蛋白质组成的复合物存在。我们揭示了在平面黑色膜与VirE2蛋白共孵育过程中,电压依赖性膜电导的一次长寿命跳跃。向HeLa细胞添加VirE2和FAM标记的寡核苷酸后,与仅与寡核苷酸孵育的细胞相比,细胞的荧光强度增加了56%。

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