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Input data for inferring species distributions in Kyphosidae world-wide

机译:输入数据以推断全世界Kyphosidae的物种分布

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Input data files for inferring the relationship among the family Kyphosidae, as presented in (Knudsen and Clements, 2016) , is here provided together with resulting topologies, to allow the reader to explore the topologies in detail. The input data files comprise seven nexus-files with sequence alignments of mtDNA and nDNA markers for performing Bayesian analysis. A matrix of recoded character states inferred from the morphology examined in museum specimens representing Dichistiidae, Girellidae, Kyphosidae, Microcanthidae and Scorpididae, is also provided, and can be used for performing a parsimonious analysis to infer the relationship among these perciform families. The nucleotide input data files comprise both multiple and single representatives of the various species to allow for inference of the relationship among the species in Kyphosidae and between the families closely related to Kyphosidae. The ‘.xml’-files with various constrained relationships among the families potentially closely related to Kyphosidae are also provided to allow the reader to rerun and explore the results from the stepping-stone analysis. The resulting topologies are supplied in newick-file formats together with input data files for Bayesian analysis, together with ‘.xml’-files. Re-running the input data files in the appropriate software, will enable the reader to examine log-files and tree-files themselves.
机译:如(Knudsen and Clements,2016)中介绍的那样,此处提供了用于推断Kyphosidae科之间关系的输入数据文件,以及由此产生的拓扑结构,以使读者可以详细探索拓扑结构。输入数据文件包括七个关系文件,它们具有用于执行贝叶斯分析的mtDNA和nDNA标记的序列比对。还提供了从代表Dichistiidae,Girellidae,Kyphosidae,Microcanthidae和Scorpididae的博物馆标本中检查的形态推断出的重新编码的字符状态矩阵,这些矩阵可以用于进行简约分析以推断这些蛇形科之间的关系。核苷酸输入数据文件包含各种物种的多个和单个代表,以推断出Kyphosidae中的物种之间以及与Kyphosidae密切相关的科之间的关系。还提供了可能与Kyphosidae密切相关的家族之间具有各种受约束关系的“ .xml”文件,以使读者可以重新运行并探索踏脚石分析的结果。生成的拓扑以newick文件格式以及用于贝叶斯分析的输入数据文件以及“ .xml”文件提供。在适当的软件中重新运行输入数据文件,将使读者能够检查日志文件和树文件本身。

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