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Mathematical Modeling of the Phoenix Rising Pathway

机译:凤凰升起路径的数学建模

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Apoptosis is a tightly controlled process in mammalian cells. It is important for embryogenesis, tissue homoeostasis, and cancer treatment. Apoptosis not only induces cell death, but also leads to the release of signals that promote rapid proliferation of surrounding cells through the Phoenix Rising (PR) pathway. To quantitatively understand the kinetics of interactions of different molecules in this pathway, we developed a mathematical model to simulate the effects of various changes in the PR pathway on the secretion of prostaglandin E2 (PGE2), a key factor for promoting cell proliferation. These changes include activation of caspase 3 (C3), caspase 7 (C7), and nuclear factor κB (NFκB). In addition, we simulated the effects of cyclooxygenase-2 (COX2) inhibition and C3 knockout on the level of secreted PGE2. The model predictions on PGE2 in MEF and 4T1 cells at 48 hours after 10-Gray radiation were quantitatively consistent with the experimental data in the literature. Compared to C7, the model predicted that C3 activation was more critical for PGE2 production. The model also predicted that PGE2 production could be significantly reduced when COX2 expression was blocked via either NFκB inactivation or treatment of cells with exogenous COX2 inhibitors, which led to a decrease in the rate of conversion from arachidonic acid to prostaglandin H2 in the PR pathway. In conclusion, the mathematical model developed in this study yielded new insights into the process of tissue regrowth stimulated by signals from apoptotic cells. In future studies, the model can be used for experimental data analysis and assisting development of novel strategies/drugs for improving cancer treatment or normal tissue regeneration.
机译:凋亡是哺乳动物细胞中严格控制的过程。这对于胚胎发生,组织稳态和癌症治疗很重要。凋亡不仅诱导细胞死亡,而且导致信号的释放,从而通过Phoenix Rising(PR)途径促进周围细胞的快速增殖。为了定量了解该途径中不同分子相互作用的动力学,我们开发了一个数学模型来模拟PR途径中各种变化对前列腺素E2(PGE2)分泌的影响,前列腺素E2是促进细胞增殖的关键因素。这些变化包括caspase 3(C3),caspase 7(C7)和核因子κB(NFκB)的激活。此外,我们模拟了环氧合酶2(COX2)抑制和C3敲除对分泌的PGE2水平的影响。 10射线照射后48小时,MEF和4T1细胞中PGE2的模型预测与文献中的实验数据在定量上是一致的。与C7相比,该模型预测C3激活对于PGE2的生产更为关键。该模型还预测,当通过NFκB失活或用外源COX2抑制剂处理细胞来阻断COX2表达时,PGE2的产生将显着减少,这导致PR途径中花生四烯酸向前列腺素H2的转化率降低。总之,本研究开发的数学模型对凋亡细胞信号刺激的组织再生过程产生了新的见解。在未来的研究中,该模型可用于实验数据分析,并协助开发新的策略/药物以改善癌症治疗或正常组织再生。

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