Fast construction of the Vietoris-Rips complex

摘要

The Vietoris-Rips complex characterizes the topology of a point set. This complex is popular in topological data analysis as its construction extends easily to higher dimensions. We formulate a two-phase approach for its construction that separates geometry from topology. We survey methods for the first phase, give three algorithms for the second phase, implement all algorithms, and present experimental results. Our software can be used also for constructing any clique complex, such as the weak witness complex.