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Imaging natural history museum collections from the bottom up: 3D print technology facilitates imaging of fluid-stored arthropods with flatbed scanners

机译:从下至上对自然历史博物馆的藏物进行成像:3D打印技术可通过平板扫描仪对液体存储的节肢动物进行成像

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摘要

Availability of 3D-printed laboratory equipment holds promise to improve arthropod digitization efforts. A 3D-printed specimen scanning box was designed to image fluid-based arthropod collections using a consumer-grade flatbed scanner. The design was customized to accommodate double-width microscope slides and printed in both Polylactic Acid (PLA) and nylon (Polyamide). The workflow with two or three technicians imaged Trichoptera lots in batches of six scanning boxes. Individual images were cropped from batch imagess using an R script. PLA and nylon both performed similarly with no noticeable breakdown of the plastic; however, dyed nylon leeched color into the ethanol. The total time for handling, imaging, and cropping was ~8 minutes per vial, including returning material to vials and replacing ethanol. Image quality at 2400 dpi was the best and revealed several diagnostic structures valuable for partial identifications with higher utility if structures of the genitalia were captured; however, lower resolution scans may be adequate for natural history collection imaging. Image quality from this technique is similar to other natural history museum imaging techniques; yet, the scanning approach may have wider applications to morphometrics because of lack of distortion. The approach can also be applied to image vouchering for biomonitoring and other ecological studies.
机译:3D打印实验室设备的可用性有望改善节肢动物的数字化工作。设计了3D打印的标本扫描箱,以使用消费级平板扫描仪对基于流体的节肢动物采集物成像。该设计经过定制,可容纳双倍宽度的显微镜载玻片,并以聚乳酸(PLA)和尼龙(聚酰胺)印刷。由两名或三名技术人员组成的工作流程以六个扫描盒为一批,对毛鳞翅目进行了成像。使用R脚本从批处理图像中裁剪出单个图像。 PLA和尼龙的性能相似,塑料无明显破坏。但是,染色的尼龙将颜色浸入乙醇中。每个小瓶的处理,成像和裁剪总时间为〜8分钟,包括将材料放回小瓶并替换乙醇。 2400 dpi的图像质量最好,并且揭示了一些诊断结构,如果捕获了生殖器的结构,这些结构对于部分鉴定具有较高的实用性;但是,较低的分辨率扫描可能足以用于自然历史采集成像。这种技术的图像质量类似于自然博物馆的其他成像技术。然而,由于缺乏失真,扫描方法可能在形态计量学上有更广泛的应用。该方法还可以应用于生物监控和其他生态研究的图像凭证。

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