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Complete mitochondrial genome of the silver stripped skipper Leptalina unicolor (Lepidoptera: Hesperiidae)

机译:完全线粒体基因组的银剥离船长甲酸盐岩单色(Lepidoptera:Hesperiidae)

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摘要

The silver stripped skipper, Leptalina unicolor Bremer and Grey, 1853 (Lepidoptera: Hesperiidae), is listed as endangered insect in South Korea. We sequenced the whole genome (15,854 bp) of L. unicolor species using Next-Generation Sequencing method and the subsequent gap-filling method. This genome included a set of typical genes and one major non-coding A + T-rich region, with an arrangement identical to that observed in most lepidopteran genomes. Twelve protein-coding genes (PCGs) had the typical ATN start codon, whereas COI had the atypical CGA codon that is frequently found in the start region of the lepidopteran COI. The 757-bp long A + T-rich region was the second largest among completely sequenced Hesperiidae, which ranged from 234 to 793 bp. Phylogenetic reconstruction was performed by maximum-likelihood method using the concatenated sequences of 13 PCGs and two rRNAs of available species of Hesperiidae, including that of L. unicolor (a total of 28 species). The resulting phylogeny provided strong support for monophyletic Heteropterinae in which L. unicolor belongs, with the highest nodal support and a sister relationship between current L. unicolor and co-subfamilial species Carterocephalus silvicola with a bootstrap value of 91%.
机译:银剥离的船长,Leptalina Unicol Bremer和Gray,1853(Lepidoptera:Hesperiidae)被列为韩国的濒危昆虫。我们使用下一代测序方法和随后的间隙填充方法测序L.单色物种的全基因组(15,854bp)。该基因组包括一组典型的基因和一个主要的非编码A + T-富型区域,其布置与大多数鳞翅目基因组中观察到的布置相同。十二蛋白质编码基因(个PCG)具有典型的ATN起始密码子,而COI具有非典型CGA密码子是经常在鳞翅目COI的起始区域中发现。 757-BP长A + T-T-T-T-T-Tim是完全测序的哈珀胰腺中的第二大区域,其范围为234至793 bp。通过使用13pcgs的级联序列和Hesperiidae的可用物种的两次rRNA的最大似然法进行系统发育重建,包括L.单色(共28种)。所得的系统发育提供了对单色杂蛋白的强载体,其中L.单色属于Nodal的核心载体,并且目前L.单色和共聚群物种之间的姐妹关系,其自卷曲值为91%。

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