PRIME-3D2D is a 3D2D model to predict binding sites of protein–RNA interaction

摘要

iRMSD is plotted against 3D2D score (W * TM-score + (1 − W) * RNA secondary structure identity), in all-to-all comparison of NRBC439. The accumulative fraction of iRMSD ≤ 5 Å is defined as that the number of pairs with the iRMSD ≤ 5 Å is divided by all the pairs within one bin. The transition point is defined as that the similarity score threshold with which the accumulative fraction of the iRMSD ≤ 5 Å begins changing from 0 to non-zero value. The insets show the fraction of complex pairs with iRMSD ≤ 5 Å is plotted in 0.05 bins to show the phase transition. The subfigures correspond to various W.