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Role of Tet1 in genomic imprinting erasure

机译:Tet1在基因组印迹消除中的作用

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摘要

Genomic imprinting is an allele-specific gene expression system important for mammalian development and function . The molecular basis of genomic imprinting is allele-specific DNA methylation ,. While it is well known that the de novo DNA methyltransferases Dnmt3a/b are responsible for the establishment of genomic imprinting , how the methylation mark is erased during primordial germ cell (PGC) reprogramming remains a mystery. Tet1 is one of the ten-eleven translocation family proteins, which have the capacity to oxidize 5-methylcytosine (5mC) -, specifically expressed in reprogramming PGCs . Here we report that Tet1 plays a critical role in the erasure of genomic imprinting. We show that despite their identical genotype, progenies derived from mating between Tet1-KO males and wild-type females exhibit a number of variable phenotypes including placental, fetal and postnatal growth defects, and early embryonic lethality. These defects are, at least in part, caused by the dysregulation of imprinted genes, such as Peg10 and Peg3, which exhibit aberrant hypermethylation in the paternal allele of differential methylated regions (DMRs). RNA-seq reveals extensive dysregulation of imprinted genes in the next generation due to paternal loss function of Tet1. Genome-wide DNA methylation analysis of E13.5 PGCs and sperms of Tet1-KO mice revealed hypermethylation of DMRs of imprinted genes in sperm, which can be traced back to PGCs. Analysis of the DNA methylation dynamics in reprogramming PGCs suggests that Tet1 functions to wipe out remaining methylation, including imprinted genes, at the late reprogramming stage. We further provide evidence supporting Tet1's role in the erasure of paternal imprints in female germline. Thus, our study establishes a critical function of Tet1 in genomic imprinting erasure.
机译:基因组印迹是等位基因特异性的基因表达系统,对哺乳动物的发育和功能很重要 。基因组印迹的分子基础是等位基因特异性的DNA甲基化 。虽然众所周知,从头DNA甲基转移酶Dnmt3a / b负责建立基因组印记 ,但是在原始生殖细胞(PGC)重编程过程中如何清除甲基化标记仍然是一个谜。 Tet1是十一个易位家族蛋白之一,具有氧化5-甲基胞嘧啶(5mC)-的能力,在重新编程PGCs 中特别表达。在这里,我们报告Tet1在删除基因组印迹中起关键作用。我们显示,尽管它们的基因型相同,但从Tet1-KO雄性和野生型雌性交配衍生的后代表现出许多可变的表型,包括胎盘,胎儿和产后生长缺陷以及早期胚胎致死率。这些缺陷至少部分是由于印迹基因(例如Peg10和Peg3)的失调引起的,这些基因在差异甲基化区域(DMR)的父本等位基因中表现出异常的高甲基化。 RNA-seq揭示了由于Tet1的父系丧失功能,下一代印迹基因的广泛失调。 Tet1-KO小鼠的E13.5 PGC和精子的全基因组DNA甲基化分析显示,精子中印记基因的DMR的甲基化程度很高,这可以追溯到PGC。对重编程PGC中DNA甲基化动力学的分析表明,Tet1的作用是在重编程后期消除残留的甲基化,包括印迹基因。我们进一步提供证据支持Tet1在消除雌性种系中父本烙印中的作用。因此,我们的研究建立了Tet1在基因印迹消除中的关键功能。

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