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shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics

机译:Shinyheatmap:用于大数据基因组学的超快速低内存热图Web界面

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摘要

BackgroundTranscriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets, especially across single-cell sequencing studies. Visualizing such big data has posed technical challenges in biology, both in terms of available computational resources as well as programming acumen. Since heatmaps are used to depict high-dimensional numerical data as a colored grid of cells, efficiency and speed have often proven to be critical considerations in the process of successfully converting data into graphics. For example, rendering interactive heatmaps from large input datasets (e.g., 100k+ rows) has been computationally infeasible on both desktop computers and web browsers. In addition to memory requirements, programming skills and knowledge have frequently been barriers-to-entry for creating highly customizable heatmaps.
机译:背景转录组学,代谢组学,宏基因组学和其他各种下一代测序(-omics)领域以产生大型数据集而著称,尤其是在单细胞测序研究中。可视化这样的大数据已经在生物学上提出了技术难题,无论是在可用的计算资源还是编程敏锐度方面。由于热图用于将高维数值数据描绘为彩色的单元格网格,因此在成功将数据成功转换为图形的过程中,效率和速度通常被视为至关重要的考虑因素。例如,从大型输入数据集(例如,超过10万行)渲染交互式热图在台式计算机和Web浏览器上在计算上都是不可行的。除了内存需求之外,编程技能和知识经常是创建高度可定制的热图的入门障碍。

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