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SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data

机译:SciLite:显示文本注释的平台作为将研究文章与生物学数据链接的一种方式

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摘要

The tremendous growth in biological data has resulted in an increase in the number of research papers being published. This presents a great challenge for scientists in searching and assimilating facts described in those papers. Particularly, biological databases depend on curators to add highly precise and useful information that are usually extracted by reading research articles. Therefore, there is an urgent need to find ways to improve linking literature to the underlying data, thereby minimising the effort in browsing content and identifying key biological concepts.   As part of the development of Europe PMC, we have developed a new platform, SciLite, which integrates text-mined annotations from different sources and overlays those outputs on research articles. The aim is to aid researchers and curators using Europe PMC in finding key concepts more easily and provide links to related resources or tools, bridging the gap between literature and biological data.
机译:生物数据的巨大增长导致发表的研究论文数量增加。这对科学家搜索和吸收这些论文中描述的事实提出了巨大的挑战。特别是,生物学数据库依赖于策展人来添加高度精确和有用的信息,这些信息通常是通过阅读研究文章来提取的。因此,迫切需要找到一种方法来改善文献与基础数据之间的链接,从而最大程度地减少浏览内容和识别关键生物学概念的工作量。作为欧洲PMC发展的一部分,我们开发了一个新平台SciLite,该平台集成了来自不同来源的文本挖掘注释,并将这些输出覆盖在研究文章上。目的是帮助使用欧洲PMC的研究人员和策展人更轻松地找到关键概念,并提供与相关资源或工具的链接,以弥合文献与生物学数据之间的鸿沟。

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