Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data

摘要

>Summary: The program sampletrees is a Markov chain Monte Carlo sampler of gene genealogies conditional on either phased or unphased SNP genotype data. The companion program Rsampletrees is for pre- and post-processing of sampletrees files, including setting up the files for sampletrees and storing and plotting the output of a sampletrees run. >Availability and implementation: sampletrees is implemented in C ++. The source code, documentation and test files are available at . The R package Rsampletrees is available on CRAN . >Contact: >Supplementary information: are available at Bioinformatics online.