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Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling

机译:通过数据库建模鉴定核质循环作为细胞信号中的遥感器

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摘要

Considerable progress has been made in identifying the molecular composition of complex signaling networks controlling cell proliferation, differentiation, and survival. However, to discover general building principles and predict the dynamic behavior of signaling networks, it is necessary to develop quantitative models based on experimental observations. Here we report a mathematical model of the core module of the Janus family of kinases (JAK)–signal transducer and activator of transcription (STAT) signaling pathway based on time-resolved measurements of receptor and STAT5 phosphorylation. Applying the fitted model, we can determine the quantitative behavior of STAT5 populations not accessible to experimental measurement. By in silico investigations, we identify the parameters of nuclear shuttling as the most sensitive to perturbations and verify experimentally the model prediction that inhibition of nuclear export results in a reduced transcriptional yield. The model reveals that STAT5 undergoes rapid nucleocytoplasmic cycles, continuously coupling receptor activation and target gene transcription, thereby forming a remote sensor between nucleus and receptor. Thus, dynamic modeling of signaling pathways can promote functional understanding at the systems level.
机译:在鉴定控制细胞增殖,分化和存活的复杂信号网络的分子组成方面取得了相当大的进展。但是,要发现一般的构建原理并预测信令网络的动态行为,有必要基于实验观察来开发定量模型。在这里,我们根据受体和STAT5磷酸化的时间分辨测量结果,报告了Janus激酶家族(JAK)核心模块的数学模型-信号转导和转录激活(STAT)信号通路。应用拟合模型,我们可以确定无法通过实验测量获得的STAT5种群的定量行为。通过计算机调查,我们将核穿梭参数确定为对扰动最敏感的参数,并通过实验验证了模型预测,即抑制核输出会导致转录产量降低。该模型表明STAT5经历了快速的核质循环,连续地耦合受体激活和靶基因转录,从而在核与受体之间形成了一个遥感器。因此,信号通路的动态建模可以促进系统一级的功能理解。

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