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Path-Counting Formulas for Generalized Kinship Coefficients and Condensed Identity Coefficients

机译:广义亲属系数和凝聚恒等式的路径计数公式

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摘要

An important computation on pedigree data is the calculation of condensed identity coefficients, which provide a complete description of the degree of relatedness of two individuals. The applications of condensed identity coefficients range from genetic counseling to disease tracking. Condensed identity coefficients can be computed using linear combinations of generalized kinship coefficients for two, three, four individuals, and two pairs of individuals and there are recursive formulas for computing those generalized kinship coefficients (Karigl, 1981). Path-counting formulas have been proposed for the (generalized) kinship coefficients for two (three) individuals but there have been no path-counting formulas for the other generalized kinship coefficients. It has also been shown that the computation of the (generalized) kinship coefficients for two (three) individuals using path-counting formulas is efficient for large pedigrees, together with path encoding schemes tailored for pedigree graphs. In this paper, we propose a framework for deriving path-counting formulas for generalized kinship coefficients. Then, we present the path-counting formulas for all generalized kinship coefficients for which there are recursive formulas and which are sufficient for computing condensed identity coefficients. We also perform experiments to compare the efficiency of our method with the recursive method for computing condensed identity coefficients on large pedigrees.
机译:谱系数据的一个重要计算是凝聚身份系数的计算,它可以完整描述两个人的相关程度。凝聚身份系数的应用范围从遗传咨询到疾病追踪。可以使用两个,三个,四个个体和两对个体的广义亲属关系系数的线性组合来计算稠密的同一性系数,并且存在用于计算这些广义亲属关系系数的递归公式(Karigl,1981)。已经为两个(三个)个体的(广义)亲属系数提出了路径计数公式,但对于其他广义亲属系数没有路径计数公式。还显示了使用路径计数公式对两个(三个)个体的(通用)亲属系数进行计算对于大型谱系以及为谱系图量身定制的路径编码方案都是有效的。在本文中,我们提出了一个框架,用于推导广义亲属系数的路径计数公式。然后,我们给出了所有广义亲属系数的路径计数公式,对于这些亲属系数,它们具有递归公式,并且足以计算凝聚恒等式系数。我们还进行了实验,以比较我们的方法与递归方法在大谱系上计算凝聚身份系数的效率。

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