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The Generic Genome Browser: A Building Block for a Model Organism System Database

机译:通用基因组浏览器:模型生物系统数据库的构建基块

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摘要

The Generic Model Organism System Database Project (GMOD) seeks to develop reusable software components for model organism system databases. In this paper we describe the Generic Genome Browser (GBrowse), a Web-based application for displaying genomic annotations and other features. For the end user, features of the browser include the ability to scroll and zoom through arbitrary regions of a genome, to enter a region of the genome by searching for a landmark or performing a full text search of all features, and the ability to enable and disable tracks and change their relative order and appearance. The user can upload private annotations to view them in the context of the public ones, and publish those annotations to the community. For the data provider, features of the browser software include reliance on readily available open source components, simple installation, flexible configuration, and easy integration with other components of a model organism system Web site. GBrowse is freely available under an open source license. The software, its documentation, and support are available at .
机译:通用模型有机体系统数据库项目(GMOD)寻求为模型有机体系统数据库开发可重用的软件组件。在本文中,我们描述了通用基因组浏览器(GBrowse),这是一个基于Web的应用程序,用于显示基因组注释和其他功能。对于最终用户,浏览器的功能包括滚动和缩放基因组任意区域,通过搜索界标或执行所有功能的全文本搜索进入基因组区域的功能,以及实现以下功能的功能:并禁用曲目并更改其相对顺序和外观。用户可以上传私有注释以在公共注释的上下文中查看它们,并将这些注释发布到社区。对于数据提供者而言,浏览器软件的功能包括依赖于随时可用的开源组件,简单的安装,灵活的配置以及与模型生物系统网站的其他组件的轻松集成。 GBrowse是根据开放源代码许可证免费提供的。该软件,其文档和支持可从访问。

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