首页> 外文会议>The 3rd International Conference on Bioinformatics and Biomedical Engineering(iCBBE 2009)(第三届生物信息与生物医学工程国际会议)论文集 >Cloning, Bioinformatics Analysis and Functional Identification of A Novel Small Heat Shock Protein Gene from Camellia oleifera Seed
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Cloning, Bioinformatics Analysis and Functional Identification of A Novel Small Heat Shock Protein Gene from Camellia oleifera Seed

机译:油茶种子新的小热激蛋白基因的克隆,生物信息学分析和功能鉴定

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Small heat shock proteins (sHSPs) are members of a diverse family of stress proteins that are important in cells to protect proteins under stressful conditions. Degenerate primers were designed based on the conservative sHSP gene sequence of other plants in the GenBank to clone the full-length cDNA of CosHSP gene by using RACE and RT-PCR methods in the research. Bioinformatics analysis revealed that the cDNA is 699bp in length, encoding 159 amino acids residues, the putative molecular weight is 18.08 kD and the pI is 6.20, and there are two conserved domains in the protein sequence aligned with other sHSPs. The phylogenetic investigation indicated that the relationship among the same class sHSP family was very close. Five α-helices and seven β-strands were found in the second structure of Co-sHSP and its theoretical 3D structure showed an active site between Arg99 and Glu105. In order to study the function of Co-sHSP, the gene was expressed in E.coli, the result showed that Co-sHSP significantly enhanced cell survivability against heat stress.
机译:小型热激蛋白(sHSP)是多种应激蛋白家族的成员,这些家族对于细胞在应激条件下保护蛋白很重要。根据GenBank中其他植物的保守sHSP基因序列设计简并引物,采用RACE和RT-PCR方法克隆CosHSP基因的全长cDNA。生物信息学分析表明,该cDNA全长699bp,编码159个氨基酸残基,推定分子量为18.08 kD,pI为6.20,并且在蛋白质序列中有两个与其他sHSP对齐的保守结构域。系统发育研究表明,同一类sHSP家族之间的关系非常密切。在Co-sHSP的第二个结构中发现了五个α螺旋和七个β链,其理论3D结构显示了Arg99和Glu105之间的活性位点。为了研究Co-sHSP的功能,该基因在大肠杆菌中表达,结果表明Co-sHSP显着增强了细胞对热应激的存活能力。

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