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首页> 外文期刊>Journal of Clinical Microbiology >Comparison of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry and Molecular Biology Techniques for Identification of Culicoides (Diptera: Ceratopogonidae) Biting Midges in Senegal
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Comparison of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry and Molecular Biology Techniques for Identification of Culicoides (Diptera: Ceratopogonidae) Biting Midges in Senegal

机译:基质辅助激光解吸电离的飞行时间质谱和分子生物学技术的比较,用于识别塞内加尔库里科尼德斯(Diptera:Ceratopogonidae)叮咬ges

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Biting midges of the genus Culicoides are implicated as vectors for a wide variety of pathogens. The morphological identification of these arthropods may be difficult because of a lack of detailed investigation of taxonomy for this species in Africa. However, matrix-assisted laser desorption ionization?time of flight mass spectrometry (MALDI-TOF MS) profiling is efficient for arthropod identification at the species level. This study established a spectrum database of Culicoides spp. from Senegal using MALDI-TOF. Identification of Culicoides insects to the species level before mass spectrometry was performed on the basis of morphological characters. MALDI-TOF MS reference spectra were determined for 437 field-caught Culicoides of 10 species. The protein profiles of all tested Culicoides revealed several peaks with mass ranges of 2 to 20 kDa. In a validation study, 72 Culicoides specimens in the target species were correctly identified at the species level with a similarity of 95 to 99.9%. Four Culicoides protein profiles were misidentified. Nevertheless, six SuperSpectra (C. imicola, C. enderleini, C. oxystoma, C. kingi, C. magnus, and C. fulvithorax) were created. Abdomens of midges were used to amplify and sequence a portion of the mitochondrial cytochrome oxidase I gene (COI). The results obtained using the MALDI-TOF MS method were consistent with the morphological identification and similar to the genetic identification. Protein profiling using MALDI-TOF is an efficient approach for the identification of Culicoides spp., and it is economically advantageous for approaches that require detailed and quantitative information of vector species that are collected in field. The database of African Culicoides MS spectra created is the first database in Africa. The COI sequences of five Culicoides species that were previously noncharacterized using molecular methods were deposited in GenBank.
机译:Culicoides属的叮咬mid被认为是多种病原体的载体。这些节肢动物的形态鉴定可能很困难,因为在非洲缺乏对该物种的分类学的详细调查。然而,基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)分析在物种水平上对节肢动物的鉴定是有效的。这项研究建立了库里奇菌属的光谱数据库。来自塞内加尔的MALDI-TOF。在质谱分析之前,根据形态学特征将库蚊(Culicoides)昆虫鉴定到物种水平。确定了10种437种田间捕获的Culicoides的MALDI-TOF MS参考光谱。所有测试的葫芦科植物的蛋白质谱均显示出数个峰,质量范围为2至20 kDa。在验证研究中,在物种级别正确识别了目标物种中的72个Culicoides标本,相似度为95%至99.9%。四个Culicoides蛋白谱被错误鉴定。尽管如此,仍然创建了六个SuperSpectra(C。imicola,C。enderleini,C。oxystoma,C。kingi,C。magnus和C. fulvithorax)。 mid的腹部用于扩增和测序线粒体细胞色素氧化酶I基因(COI)的一部分。使用MALDI-TOF MS方法获得的结果与形态学鉴定一致,并且与遗传学鉴定相似。使用MALDI-TOF进行蛋白质谱分析是鉴定Culicoides spp。的有效方法,对于需要现场详细收集的载体物种的详细和定量信息的方法,在经济上是有利的。创建的非洲库库克群岛MS质谱数据库是非洲第一个数据库。以前未使用分子方法鉴定过的五个库里科物种的COI序列已保存在GenBank中。

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