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Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model

机译:用统一的超空间模型通过进动电子衍射断层扫描解决的球ate石堆叠顺序变化

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摘要

As a metastable phase, vaterite is involved in the first step of crystallization of several carbonate-forming systems including the two stable polymorphs calcite and aragonite. Its complete structural determination would consequently shed important light to understand scaling formation and biomineralization processes. While vaterite’s hexagonal substructure (a0 ~ 4.1 Å and c0 ~ 8.5 Å) and the organization of the carbonate groups within a single layer is known, conflicting interpretations regarding the stacking sequence remain and preclude the complete understanding of the structure. To resolve the ambiguities, we performed precession electron diffraction tomography (PEDT) to collect single crystal data from 100 K to the ambient temperature. The structure was solved ab initio and described over all the temperature range using a unified modulated structure model in the superspace group C12/c1(α0γ)00 with a = a0 = 4.086(3) Å, b = 3a0 = 7.089(9) Å, c = c0 = 8.439(9) Å, α = β = γ = 90° and >q = 23>a* + >γc*. At 100 K the model presents a pure 4-layer stacking sequence with γ = 12 whereas at the ambient temperature, ordered stacking faults are introduced leading to γ < 12. The model was refined against PEDT data using the dynamical refinement procedure including modulation and twinning as well as against x-ray powder data by the Rietveld refinement.
机译:作为亚稳相,球ate石参与了几个碳酸盐形成系统的结晶的第一步,其中包括两个稳定的多晶型方解石和文石。因此,其完整的结构测定将为理解结垢的形成和生物矿化过程提供重要的启示。尽管知道了球ate石的六边形亚结构(a0 ~~ 4.1Å和c0 ~~ 8.5Å)和碳酸酯基团在单层内的组织,但有关堆叠顺序的解释仍然相互矛盾,因此无法完全理解其结构。为了解决歧义,我们进行了旋进电子衍射断层扫描(PEDT),以收集从100 K到环境温度的单晶数据。该结构从头开始求解,并在超空间群C12 / c1(α0γ)00中使用统一的调制结构模型对整个温度范围进行了描述,其中a = a0 = 4.086(3),b = <数学xmlns:mml =“ http://www.w3.org/1998/Math/MathML“ id =” M2“溢出=” scroll“> 3 a0 = 7.089(9)Å,c = c0 = 8.439(9)Å,α=β=γ= 90°和> q = <数学xmlns:mml =“ http:// www。 w3.org/1998/Math/MathML“ id =” M4“ overflow =” scroll“> 2 3 > a * + >γc *。在100 K时,模型呈现出一个纯4层堆叠序列,其中γ= <数学xmlns:mml =“ http://www.w3.org/1998/Math/MathML” id =“ M6”溢出=“ scroll”> 1 2 在环境温度下,引入有序的堆垛层错,导致γ 数学xmlns:mml =“ http://www.w3.org/1998/Math/MathML” id =“ M8”溢出=“ scroll”> 1 2 。使用包括调制和孪生在内的动态优化程序针对PEDT数据对模型进行了优化,以及通过Rietveld改进对X射线粉末数据进行了修正。

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