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Study of solute-solvent interactions with vibrational CD spectroscopy and DFT calculations.

机译:用振动CD光谱和DFT计算研究溶质与溶剂的相互作用。

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摘要

My PhD thesis work is centered on developing a suitable approach to account for solvent effects in solution spectroscopic measurements and on providing significant insights into the intermolecular interactions between chiral solute and solvent, in particular water, molecules. Vibrational absorption (VA) and vibrational circular dichroism (VCD) spectroscopic techniques have been used as the main experimental tools to study conformational distributions and most importantly solute-solvent interactions of a number of prototype chiral molecules in several common solvents. The spectral window from 800 cm-1 to 1800 m-1 was used for data acquisition. Aqueous solutions, both normal and deuterated water, and organic solvents such as methanol, dimethyl sulfoxide, and chloroform were used. Complementary optical rotatory dispersion measurements have also been carried out. Density functional theory has been employed to perform all calculations for conformational searches, geometry optimizations, VA, VCD, UV, and ECD intensities, and spectral simulations. To account for effects of water solvent, a clusters-in-a-liquid approach has been proposed. Molecular dynamics simulations and radial distribution function calculations have also been carried out to identify the representative hydration clusters, i.e. chiral solute-(water)N. Initial conformational analyses have been done using small basis set like 6-31G(d), which is a compromise between accuracy and computational cost. For final calculations, several larger basis set like 6-31++G(d,p), 6- 311++G(d,p), cc-pVTZ, and aug-cc-pVTZ, have been used and the specific choices depend on the size and complexity of systems under the investigation.;Geometries of the molecular systems of interest have been evaluated in the gas phase and in bulk solvent using the implicit solvation polarization continuum model, while the related geometries of the explicit hydration clusters of the targeted chiral molecules have been similarly evaluated. My thesis work shows that inclusion of both explicit and implicit solvent effects simultaneously is essential to interpret the experimental VA and VCD spectra whenever strong hydrogen-bonding interactions are expected between chiral solute and solvent molecules. When no strong solvent--solute hydrogen-bonding interactions are expected, it was found that the gas phase monomer model is adequate but not optimal for spectral interpretations and the inclusion of the implicit bulk water environment is highly recommended.
机译:我的博士学位论文的工作重点是开发一种解决溶液光谱测量中溶剂影响的合适方法,并提供对手性溶质与溶剂(尤其是水)分子之间的分子间相互作用的重要见解。振动吸收(VA)和振动圆二色性(VCD)光谱技术已用作研究多种原型手性分子在几种常见溶剂中的构象分布以及最重要的溶质-溶剂相互作用的主要实验工具。使用800 cm-1至1800 m-1的光谱窗口进行数据采集。使用纯净水和氘代水的水溶液,以及甲醇,二甲基亚砜和氯仿等有机溶剂。还进行了互补的旋光色散测量。密度泛函理论已用于构象搜索,几何优化,VA,VCD,UV和ECD强度以及光谱模拟的所有计算。为了考虑水溶剂的影响,提出了一种在液体中成簇的方法。还进行了分子动力学模拟和径向分布函数计算,以鉴定代表性的水合簇,即手性溶质-(水)N。最初的构象分析已经使用6-31G(d)这样的小基集进行了,这是准确性和计算成本之间的折衷。为了进行最终计算,使用了一些较大的基础集,例如6-31 ++ G(d,p),6-311 ++ G(d,p),cc-pVTZ和aug-cc-pVTZ,具体选择的方法取决于所研究系统的大小和复杂性。已使用隐式溶剂化极化连续谱模型在气相和本体溶剂中评估了目标分子系统的几何结构,而显式水合簇的相关几何结构相似地评估了靶向手性分子。我的论文工作表明,当预期手性溶质和溶剂分子之间会发生强烈的氢键相互作用时,同时包含显式和隐式溶剂效应对于解释实验VA和VCD光谱至关重要。当预期没有强的溶剂-溶质氢键相互作用时,发现气相单体模型是适当的,但对于光谱解释而言不是最佳的,因此强烈建议包含隐式的大量水环境。

著录项

  • 作者

    Poopari, Mohammad Reza.;

  • 作者单位

    University of Alberta (Canada).;

  • 授予单位 University of Alberta (Canada).;
  • 学科 Physical chemistry.;Pharmaceutical sciences.
  • 学位 Ph.D.
  • 年度 2014
  • 页码 262 p.
  • 总页数 262
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 老年病学;
  • 关键词

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